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Don't make learners dig in Biocontainers
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pinin4fjords authored Sep 20, 2024
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Expand Up @@ -670,7 +670,7 @@ Nextflow automatically sets up an environment for the given package names listed

!!! question "Exercise"

The tools `fastqc` and `salmon` are both available in BioContainers. Add the appropriate `container` directives to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf` to use BioContainers instead of the container image you have been using in this training.
The tools `fastqc` and `salmon` are both available in BioContainers (`quay.io/biocontainers/fastqc:v0.11.5` and `quay.io/biocontainers/salmon:1.7.0--h84f40af_0`, respectively). Add the appropriate `container` directives to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf` to use BioContainers instead of the container image you have been using in this training.

!!! tip "Hint"

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