Skeletons and foldlabels for the whole brain #75
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| f"{self.path_to_graph}/{self.side}*.arg" | ||
| if self.side == "F": | ||
| graph_path = f"{self.src_dir}/{subject}*/" + \ | ||
| f"{self.path_to_graph}/?{subject}*.arg" |
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C'est normal qu'il y ait un {subject] en plus dans le path ?
| graph_right) | ||
| if g_to_icbm_template_left != g_to_icbm_template_right: | ||
| raise DeepFoldingError(f"Left and right transformations files are not the same: " | ||
| f"{g_to_icbm_template_left} and {g_to_icbm_template_right}") |
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Mais du coup, vu que la DeepFoldingError fait que pass, ça arrête le sujet en cours ?
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Update the code to create skeletons and foldlabels for the whole brain with the parameter
side == "F":generate_full_skeletonandgenerate_full_foldlabelfunctions to create volumes of the whole brainget_left_right_graph_filesmethods to retrieve the left and graph files from a subjectside == "F"ingenerate_one_foldlabelandgenerate_one_skeletonmethodsDeepFoldingErrorto handle specific cases (for instance, stop volume generation when left and right graph files do not have the same header)Minor change: change source and output filenames in
resample_files.pyto add_between filenames chosen by the user and subject id.