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DESCRIPTION
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DESCRIPTION
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Package: Magellan
Title: Spatial prioritization in spatial transcriptomics data
Version: 0.0.0.9000
Authors@R: c(
person("Michael", "Skinnider", email = "[email protected]",
role = c("aut", "cre", "led")),
person("Jordan", "Squair", email = "[email protected]",
role = "aut"))
BugReports: https://github.com/neurorestore/Magellan/issues
Description: Magellan is an R package to circumscribe the response to a biological perturbation within spatial transcriptomics data.
Depends: R (>= 3.5.0)
Imports:
Augur,
dplyr (>= 0.8.0),
purrr (>= 0.3.2),
tibble (>= 2.1.3),
magrittr (>= 1.5),
tester (>= 0.1.7),
Matrix (>= 1.2-14),
sparseMatrixStats (>= 0.1.0),
parsnip (>= 0.0.2),
recipes (>= 0.1.4),
rsample (>= 0.0.4),
yardstick (>= 0.0.3),
pbmcapply (>= 1.5.0),
lmtest (>= 0.9-37),
randomForest (>= 4.6-14),
tidyselect (>= 0.2.5),
rlang (>= 0.4.0),
tidyr (>= 1.1.2),
RANN (>= 2.6.1),
methods,
stats,
Rdpack (>= 0.7)
Suggests: knitr, Seurat, SummarizedExperiment, glmnet
VignetteBuilder: knitr
License: GPL-3 + file LICENSE
Encoding: UTF-8
RdMacros: Rdpack
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.0