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Add TopoFit #51
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@satra Topofit uses freesurfer for preprocessing the inputs before inference. Should we include freesurfer as a requirement to enable preprocessing or should we warn the user that the data has to be preprocessed first outside the zoo? |
you can make preprocess an option. presumably you can use the minimal freesurfer for this instead of all of freesurfer. see neurodocker for the min recon-all version. however this can be one of those MVP, MVP+1 things. MVP - don't include, file an issue, include in MVP + 1. |
Makes sense. Thank you. |
The saved model and predict.py scripts can be found at https://github.com/neuroneural/topofit_fork.
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