Nobrainer

[hvgazula]

Title

Nobrainer: A framework for developing neural network models for 3D image processing

Short description and the goals for the OHBM BrainHack

Nobrainer-zoo is a toolbox with a collection of deep learning neuroimaging models that eases the use of pre-trained models for various applications. Nobrainer-zoo provides the required environment with all the dependencies for training/inference of models.

During the hackathon, we aim to incorporate new models into the zoo along the lines of existing ones. Some of the models include TopoFit, CorticalFlow, Vox2Cortex, CortexODE, PialNN, and many other deep learning-based neuroimaging models that users would want to see as part of the nobrainer-zoo.

Tasks are designed to be really simple and to facilitate this model integration, we also provide a step-by-step documentation/guide that can be found at https://github.com/neuronets/trained-models/blob/master/add_model_instructions.md

Link to the Project

https://github.com/neuronets/nobrainer-zoo.git

Image for the OHBM brainhack website

No response

Project lead

@satra

Main Hub

Montreal

Other Hub covered by the leaders

• Montreal
• Asia / Pacific
• Europe / Middle East / Africa
• Americas

Skills

Python, Datalad, Docker, Singularity

Recommended tutorials for new contributors

• Set up a brainhack friendly computing environment
• A introduction to Bash
• Python: Writing a script
• Python: Data analysis with Python
• Python: Visualisation
• Machine learning basics
• BIDS
• Machine learning for neuroimaging
• VCS: Using Git and Github
• VCS: Data management with Datalad
• Virtualization
• High Performance Computing: Oracle cloud resource

Good first issues

neuronets/trained-models#51

Twitter summary

No response

Short name for the Discord chat channel (~15 chars)

nobrainer-project

Please read and follow the OHBM Code of Conduct

• I agree to follow the OHBM Code of Conduct during the hackathon

[hvgazula]

Hello @anibalsolon! I understand that this project hasn't been added to the discord list. Could you please let me know what needs to be done to add there?

[anibalsolon]

hey! it should be here: https://discord.com/channels/920383461829795920/1131262858307575870

[hvgazula]

Thank you.

[ufangYang]

hi @hvgazula can you provide the content and/or figure for this project to be added to Brainhack Proceeding 2023 by 15th May? Also, please don't forget to fill out your team member's details using this form: https://forms.gle/Ku3AVHcXvpUqVVkV7 . Cheers

[satra]

@ufangYang - i don't believe anything was done on this during the hackathon. let's close this.

[ufangYang]

@satra, thanks, got it!