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How to Transfer files

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Xuan Mai PHAM edited this page May 26, 2023 · 2 revisions

Depending on the size and preference, you will have 4 different ways to transfer files. Each workflow step is explained in detail in each section whether you want to upload or download files.

  1. If you just have a few files, you can upload the files one by one using the web browser.
  2. If you have many files or file(s) greater than 500 Mb, it will be easier to upload them all at once using an SFTP server.
  3. Ask the CBRAIN admins to configure one or several Data Providers directly on a user's machine or at a user's lab.
  4. Create your own Private data provider

For your convenience, you can also find detailed information on our Data transfer tutorial

Questions or Issues?

For any questions or issues related to the registration process for accessing the UK Biobank data through the McGill agreement, please contact the NeuroHub team by email at [email protected].

For any questions or issues specifically related to accessing the NeuroHub portal or using any of the NeuroHub features and functionalities, please contact the NeuroHub team by email at [email protected].

Table of Contents

1. Getting started

  1. Get a NeuroHub account
  2. Obtain UKBiobank access

2. Using NeuroHub

  1. Available Tools and Datasets
  2. Access NeuroHub
  3. Creating a project
  4. LORIS Data Query TooL(DQT)
  5. Jupyter Notebooks in NeuroHub
  6. Messaging in NeuroHub
  7. Accessing the Canadian Open Neuroscience Platform(CONP) datasets
  8. Accessing the HCP(Human Connectome Project) datasets
  9. Accessing the UK Biobank dataset
  10. Accessing the ABCD dataset
  11. Accessing the OpenNeuro dataset

3. Examples

  1. Analyses of structural data
  2. Cellranger Count
  3. scrNAbox
  4. BraTSPipeline

4. Supplementary Information

5. Direct access to the UK Biobank data

  1. Available Data
  2. An example of extracting ICD codes from UK Biobank tabular data
  3. Accessing Imaging Data

6. NeuroHub and Machine Learning

7. Acknowledging NeuroHub

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