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5.0.Direct access to the UK Biobank data

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Xuan Mai PHAM edited this page Jun 7, 2023 · 8 revisions

Thanks to the agreement between NeuroHub and UK Biobank, NeuroHub users can have direct access to the data on the Alliance Canada.

To access the data, you will need an Alliance account and a Compute Canada Role Identifier (CCRI) associated with that account. More information on requirement access can be found here based on your role. If you did not submit your CCRI when first creating your account, contact [email protected] and send it to us.
Once we have your CCRI, you will be granted access to the data. You can verify that you have access by checking your groups (login to Beluga and type groups; you will see cq-ukb-neurohub when you have been correctly added).

Section 5.1 : Available Data

Section 5.2 : Accessing Data

Questions or Issues?

For any questions or issues related to the registration process for accessing the UK Biobank data through the McGill agreement, please contact the NeuroHub team by email at [email protected].

For any questions or issues specifically related to accessing the NeuroHub portal or using any of the NeuroHub features and functionalities, please contact the NeuroHub team by email at [email protected].

Table of Contents

1. Getting started

  1. Get a NeuroHub account
  2. Obtain UKBiobank access

2. Using NeuroHub

  1. Available Tools and Datasets
  2. Access NeuroHub
  3. Creating a project
  4. LORIS Data Query TooL(DQT)
  5. Jupyter Notebooks in NeuroHub
  6. Messaging in NeuroHub
  7. Accessing the Canadian Open Neuroscience Platform(CONP) datasets
  8. Accessing the HCP(Human Connectome Project) datasets
  9. Accessing the UK Biobank dataset
  10. Accessing the ABCD dataset
  11. Accessing the OpenNeuro dataset

3. Examples

  1. Analyses of structural data
  2. Cellranger Count
  3. scrNAbox
  4. BraTSPipeline

4. Supplementary Information

5. Direct access to the UK Biobank data

  1. Available Data
  2. An example of extracting ICD codes from UK Biobank tabular data
  3. Accessing Imaging Data

6. NeuroHub and Machine Learning

7. Acknowledging NeuroHub

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