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updated dockerfile
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nfancy committed Feb 17, 2024
1 parent ed4aceb commit 74d8418
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4 changes: 2 additions & 2 deletions Dockerfile
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Expand Up @@ -38,7 +38,7 @@ RUN apt-get update \
libcairo2-dev \
libtiff5-dev \
libreadline-dev \
libgsl0-dev \
libgsl-dev \
libgslcblas0 \
libgtk2.0-dev \
libgl1-mesa-dev \
Expand Down Expand Up @@ -111,7 +111,7 @@ RUN pip install stratocumulus \
&& rm -rf /tmp/*


RUN install2.r -e \
RUN install2.r -e -t source \
argparse \
assertthat \
BiocManager \
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2 changes: 1 addition & 1 deletion misc/requirements-bioc.R
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Expand Up @@ -23,4 +23,4 @@ bioc_pkgs<-c(
)

requireNamespace("BiocManager")
BiocManager::install(bioc_pkgs, ask=F)
BiocManager::install(bioc_pkgs, ask=F, type = "source")

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