update readme cran badge [skip ci]

.Rhistory

@@ -1,26 +1,3 @@
-)
-)
-customizations
-jsn$customizations
-customizations=list(
-vscode=list(
-settings=list(),
-extensions=
-list("reditorsupport.r",
-"visualstudioexptteam.vscodeintellicode",
-"ionutvmi.path-autocomplete")
-)
-)
-customizations
-jsn$customizations
-cat(paste(readLines(path),collapse ="\n"))
-devtools::check_man()
-library(rworkflows)
-usethis::use_test()
-library(rworkflows)
-path <- use_codespace(save_dir=tempdir())
-testthat::expect_true(file.exists(path))
-jsonlite::read_json(path)
 jsn <- jsonlite::read_json(path)
 names(jsn)
 testthat::expect_true(
@@ -510,3 +487,26 @@ testthat::expect_true(length(deps)>10)
 2500/3
 devtools::check_man()
 library(rworkflows)
+testthat::skip_on_cran()
+?testthat::skip_on_cran()
+testthat::skip_if_offline()
+devtools::check_man()
+library(rworkflows)
+devtools::build_manual()
+devtools::build_manual(path = "inst/")
+?rworkflows::construct_runners()
+?rworkflows::construct_runners(  bioc = list("release", "release", "release"),
+)
+rworkflows::construct_runners(  bioc = list("release", "release", "release"),
+)
+rworkflows::construct_cont()
+rworkflows::construct_cont(default_tag = "release")
+devtools::test_coverage()
+devtools::test_coverage()
+devtools::test_coverage()
+devtools::test_coverage()
+devtools::test_coverage()
+library(rworkflows)
+?testthat::skip_on_cran()
+testthat::skip_if_offline()
+readLines("https://hub.docker.com/v2/repositories//bioconductor/bioconductor_docker/tags?page_size=1000")

README.Rmd

@@ -1,11 +1,13 @@
 ---
 title: ""  
-author: "`r rworkflows::use_badges(add_actions=c('rworkflows','rworkflows_static','rworkflows_dev'), add_cran_release = TRUE, add_cran_checks = TRUE, add_cran_download_month=TRUE, add_cran_download_total=TRUE, add_codecov_graphs='icicle', hex_height=350, add_doi='https://doi.org/10.5281/zenodo.10048573')`" 
+author: "`r rworkflows::use_badges(add_actions=c('rworkflows','rworkflows_static','rworkflows_dev'), add_cran_release = TRUE, add_cran_checks = FALSE, add_cran_download_month=TRUE, add_cran_download_total=TRUE, add_codecov_graphs='icicle', hex_height=350, add_doi='https://doi.org/10.5281/zenodo.10048573')`" 
 date: "<h4>README updated: <i>`r format( Sys.Date(), '%b-%d-%Y')`</i></h4>"
 output:
   github_document
 ---
 
+[![CRAN checks](https://badges.cranchecks.info/worst/rworkflows.svg)](https://cran.r-project.org/web/checks/check_results_rworkflows.html)
+
 ```{r setup, include=FALSE}
 pkg <- read.dcf("DESCRIPTION", fields = "Package")[1]
 ```

README.md

@@ -1,7 +1,5 @@
 <img src='https://github.com/neurogenomics/rworkflows/raw/master/inst/hex/hex.png' title='Hex sticker for rworkflows' height='350'><br>
 [![](https://www.r-pkg.org/badges/version/rworkflows?color=black)](https://cran.r-project.org/package=rworkflows)
-[![CRAN
-checks](https://badges.cranchecks.info/summary/rworkflows.svg)](https://cran.r-project.org/web/checks/check_results_rworkflows.html)
 [![](http://cranlogs.r-pkg.org/badges/last-month/rworkflows?color=black)](https://cran.r-project.org/package=rworkflows)
 [![](http://cranlogs.r-pkg.org/badges/grand-total/rworkflows?color=black)](https://cran.r-project.org/package=rworkflows)
 [![License:
@@ -24,9 +22,12 @@ status](https://github.com/neurogenomics/rworkflows/workflows/rworkflows_dev/bad
 Authors: <i>Brian Schilder, Alan Murphy, Nathan Skene</i>  
 </h4>
 <h4>  
-README updated: <i>Jan-02-2024</i>  
+README updated: <i>Feb-01-2024</i>  
 </h4>
 
+[![CRAN
+checks](https://badges.cranchecks.info/worst/rworkflows.svg)](https://cran.r-project.org/web/checks/check_results_rworkflows.html)
+
 ## Citation
 
 If you use `rworkflows`, please cite:
@@ -288,7 +289,7 @@ utils::sessionInfo()
 
     ## R version 4.3.1 (2023-06-16)
     ## Platform: aarch64-apple-darwin20 (64-bit)
-    ## Running under: macOS Sonoma 14.2.1
+    ## Running under: macOS Sonoma 14.3
     ## 
     ## Matrix products: default
     ## BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
@@ -297,7 +298,7 @@ utils::sessionInfo()
     ## locale:
     ## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
     ## 
-    ## time zone: America/New_York
+    ## time zone: Europe/London
     ## tzcode source: internal
     ## 
     ## attached base packages:
@@ -309,15 +310,15 @@ utils::sessionInfo()
     ##  [7] tidyselect_1.2.0    rvcheck_0.2.1       scales_1.3.0       
     ## [10] yaml_2.3.8          fastmap_1.1.1       here_1.0.1         
     ## [13] ggplot2_3.4.4       R6_2.5.1            generics_0.1.3     
-    ## [16] knitr_1.45          yulab.utils_0.1.2   tibble_3.2.1       
+    ## [16] knitr_1.45          yulab.utils_0.1.3   tibble_3.2.1       
     ## [19] desc_1.4.3          dlstats_0.1.7       rprojroot_2.0.4    
     ## [22] munsell_0.5.0       pillar_1.9.0        RColorBrewer_1.1-3 
-    ## [25] rlang_1.1.2         utf8_1.2.4          cachem_1.0.8       
+    ## [25] rlang_1.1.3         utf8_1.2.4          cachem_1.0.8       
     ## [28] badger_0.2.3        xfun_0.41           fs_1.6.3           
     ## [31] memoise_2.0.1.9000  cli_3.6.2           magrittr_2.0.3     
-    ## [34] rworkflows_1.0.1    digest_0.6.33       grid_4.3.1         
+    ## [34] rworkflows_1.0.1    digest_0.6.34       grid_4.3.1         
     ## [37] rstudioapi_0.15.0   lifecycle_1.0.4     vctrs_0.6.5        
-    ## [40] data.table_1.14.10  evaluate_0.23       glue_1.6.2         
+    ## [40] data.table_1.14.10  evaluate_0.23       glue_1.7.0         
     ## [43] fansi_1.0.6         colorspace_2.1-0    rmarkdown_2.25     
     ## [46] tools_4.3.1         pkgconfig_2.0.3     htmltools_0.5.7
 

tests/testthat/test-check_cont.R

@@ -1,6 +1,9 @@
 test_that("check_cont works", {
   ## Don't run on CRAN servers due to ongoing internet connectivity issues
-  if(!is_gha()) testthat::skip_if_offline()
+  if(!is_gha()) {
+    testthat::skip_if_offline()
+    testthat::skip_on_cran()
+  }
 
   testthat::expect_no_warning(
     check_cont(cont = "bioconductor/bioconductor_docker:devel")
@@ -23,8 +26,7 @@ test_that("check_cont works", {
   #### Include registry ####
   testthat::expect_no_warning(
     check_cont(cont = "ghcr.io/bioconductor/bioconductor_docker")
-  )
-
+  ) 
   testthat::expect_no_warning(
     check_cont(cont = "docker.io/bioconductor/bioconductor_docker:devel")
   )