Testing gha

neurogenomics · Mar 4, 2024 · f5b96cc · f5b96cc
1 parent e6b34d6
commit f5b96cc
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Showing 7 changed files with 6 additions and 5 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,3 +1,4 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
 ^LICENSE\.md$
+^\.DS_Store$
diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml
@@ -21,7 +21,7 @@ jobs:
       fail-fast: ${{ false }}
       matrix:
         config:
-        - os: ubuntu-latest # not run on Windows because MACSr is not supported.
+        - os: ubuntu-latest
           bioc: devel
           r: auto
           cont: ghcr.io/bioconductor/bioconductor_docker:devel

diff --git a/NAMESPACE b/NAMESPACE
@@ -1,12 +1,14 @@
 # Generated by roxygen2: do not edit by hand
 
 export(calculate_idr)
+export(conservative_idr)
 export(feature_counts_matrix)
 export(generate_pseudoreplicates)
 export(idr_analysis)
 export(macs_call_peak)
 export(multiple_replicates_chipr)
 export(multiple_replicates_mspc)
+export(optimal_idr)
 import(ChIPpeakAnno)
 import(GenomicAlignments)
 import(GenomicRanges)

diff --git a/R/conservative_idr.R b/R/conservative_idr.R
@@ -12,7 +12,7 @@
 #' @returns A list containing a summary of the IDR analysis along with the path
 #' to the output files.
 #'
-#' @keywords internal
+#' @export
 
 conservative_idr <- function(treat_files,
                              control_files = NULL,

diff --git a/R/optimal_idr.R b/R/optimal_idr.R
@@ -12,7 +12,7 @@
 #'
 #' @returns Summary of the IDR output
 #'
-#' @keywords internal
+#' @export
 optimal_idr <- function(treat_files,
                         control_files = NULL,
                         is_paired,

diff --git a/man/conservative_idr.Rd b/man/conservative_idr.Rd
diff --git a/man/optimal_idr.Rd b/man/optimal_idr.Rd