Update function documentation.

neurogenomics · Mar 1, 2024 · f2300f4 · f2300f4
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Showing 9 changed files with 27 additions and 34 deletions.
diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml
@@ -32,10 +32,6 @@ jobs:
           cont: ~
           rspm: ~
     steps:
-    - name: Install Conda (macOS)
-      if: ${{ matrix.config.os == 'macOS-latest' }}
-      run: |
-        brew install zlib
     - uses: neurogenomics/rworkflows@master
       with:
         run_bioccheck: ${{ false }}

diff --git a/man/conservative_idr.Rd b/man/conservative_idr.Rd
diff --git a/man/feature_counts_matrix.Rd b/man/feature_counts_matrix.Rd
diff --git a/man/filter_bam.Rd b/man/filter_bam.Rd
diff --git a/man/generate_pseudoreplicates.Rd b/man/generate_pseudoreplicates.Rd
diff --git a/man/multiple_replicates_chipr.Rd b/man/multiple_replicates_chipr.Rd
diff --git a/man/multiple_replicates_mspc.Rd b/man/multiple_replicates_mspc.Rd
diff --git a/man/optimal_idr.Rd b/man/optimal_idr.Rd
diff --git a/tests/testthat/test-feature_counts_matrix.R b/tests/testthat/test-feature_counts_matrix.R
@@ -10,7 +10,7 @@ test_that("Filtered BAM file is created in the desired location", {
                       package = "ConsensusPeak")
 
   result <- feature_counts_matrix(peak_file = peak,
-                                  treat_files = c(treat_1, treat_2)
+                                  bam_files = c(treat_1, treat_2)
                                   )
 
   # Check if the feature counts matrix is created