Edit calculate_idr() to allow original peaks to be written to a file.… #36
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| name: rworkflows | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| - devel | |
| - RELEASE_** | |
| jobs: | |
| rworkflows: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| container: ${{ matrix.config.cont }} | |
| strategy: | |
| fail-fast: ${{ false }} | |
| matrix: | |
| config: | |
| - os: ubuntu-latest # not run on Windows because MACSr is not supported. | |
| bioc: devel | |
| r: auto | |
| cont: ghcr.io/bioconductor/bioconductor_docker:devel | |
| rspm: ~ | |
| - os: macOS-latest | |
| bioc: devel | |
| r: auto | |
| cont: ~ | |
| rspm: ~ | |
| steps: | |
| - name: Setup .NET # Install dotnet v6.0.x. Required for MSPC test. | |
| uses: actions/setup-dotnet@v1 | |
| with: | |
| dotnet-version: '6.0.x' | |
| - name: Install latest version of conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| miniconda-version: "latest" | |
| auto-activate-base: false | |
| - uses: neurogenomics/rworkflows@master | |
| with: | |
| run_bioccheck: ${{ true }} | |
| run_rcmdcheck: ${{ true }} | |
| as_cran: ${{ true }} | |
| run_vignettes: ${{ true }} | |
| has_testthat: ${{ true }} | |
| run_covr: ${{ true }} | |
| run_pkgdown: ${{ true }} | |
| has_runit: ${{ false }} | |
| has_latex: ${{ false }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run_docker: ${{ false }} | |
| DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} | |
| runner_os: ${{ runner.os }} | |
| cache_version: cache-v1 | |
| docker_registry: ghcr.io |