Skip to content

Commit

Permalink
Merge pull request #25 from neurobagel/add_updated_examples
Browse files Browse the repository at this point in the history
[MNT] Update for longitudinal pheno sessions
  • Loading branch information
surchs authored Dec 12, 2023
2 parents 94282f1 + 41e4ebd commit 519b076
Show file tree
Hide file tree
Showing 2 changed files with 535 additions and 227 deletions.
305 changes: 232 additions & 73 deletions data-upload/example_synthetic.jsonld
Original file line number Diff line number Diff line change
Expand Up @@ -27,18 +27,14 @@
},
"Diagnosis": "nb:Diagnosis",
"Image": "nb:Image",
"Session": "nb:Session",
"ImagingSession": "nb:ImagingSession",
"hasFilePath": {
"@id": "nb:hasFilePath"
},
"hasAcquisition": {
"@id": "nb:hasAcquisition"
},
"Sex": "nb:Sex",
"Subject": "nb:Subject",
"hasSession": {
"@id": "nb:hasSession"
},
"PhenotypicSession": "nb:PhenotypicSession",
"hasAge": {
"@id": "nb:hasAge"
},
Expand All @@ -54,115 +50,278 @@
"hasAssessment": {
"@id": "nb:hasAssessment"
},
"Session": "nb:Session",
"Sex": "nb:Sex",
"Subject": "nb:Subject",
"hasSession": {
"@id": "nb:hasSession"
},
"SubjectGroup": "nb:SubjectGroup"
},
"identifier": "nb:45e79e99-828b-4cea-b7bf-b29a754bcb5d",
"identifier": "nb:e0c7d08c-edcc-4c2a-816a-306878ed7be2",
"hasLabel": "BIDS synthetic",
"hasPortalURI": "https://github.com/bids-standard/bids-examples",
"hasSamples": [
{
"identifier": "nb:2a1a3d70-31e7-4030-abd6-7abdd2869e49",
"identifier": "nb:34ec1e2d-9a81-4a50-bcd0-eb22c88d11e1",
"hasLabel": "sub-01",
"hasAge": 34.1,
"hasSex": {
"identifier": "snomed:248152002",
"schemaKey": "Sex"
},
"isSubjectGroup": {
"identifier": "ncit:C94342",
"schemaKey": "SubjectGroup"
},
"hasAssessment": [
"hasSession": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
"identifier": "nb:85c7473c-6122-4999-ad3b-5cd57a883c87",
"hasLabel": "ses-01",
"hasAge": 34.1,
"hasSex": {
"identifier": "snomed:248152002",
"schemaKey": "Sex"
},
"isSubjectGroup": {
"identifier": "ncit:C94342",
"schemaKey": "SubjectGroup"
},
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
"identifier": "nb:eb57d0c1-fb96-4c04-8c16-1f29f7f40db4",
"hasLabel": "ses-02",
"hasAge": 35.3,
"hasSex": {
"identifier": "snomed:248152002",
"schemaKey": "Sex"
},
"isSubjectGroup": {
"identifier": "ncit:C94342",
"schemaKey": "SubjectGroup"
},
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
}
],
"schemaKey": "Subject"
},
{
"identifier": "nb:6d7921bf-37ad-428d-8aef-97b25f9ad496",
"identifier": "nb:2de41397-805f-4059-b464-388ef501d6e5",
"hasLabel": "sub-02",
"hasSex": {
"identifier": "snomed:248153007",
"schemaKey": "Sex"
},
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
"hasSession": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
"identifier": "nb:0ce182f3-b47c-4b50-8b76-8f257e490cf3",
"hasLabel": "ses-01",
"hasSex": {
"identifier": "snomed:248153007",
"schemaKey": "Sex"
},
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
"identifier": "nb:4871d5c2-963f-4825-ab43-85a87edac4ce",
"hasLabel": "ses-02",
"hasAge": 39.0,
"hasSex": {
"identifier": "snomed:248153007",
"schemaKey": "Sex"
},
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
}
],
"schemaKey": "Subject"
},
{
"identifier": "nb:e3f6b816-575e-4efd-b64b-33d7bac87f5c",
"identifier": "nb:d4258426-2971-43ff-92fa-4b20bd21c31f",
"hasLabel": "sub-03",
"hasAge": 22.1,
"hasAssessment": [
"hasSession": [
{
"identifier": "nb:3f9c82d5-6648-4b9b-8f86-195ee9283875",
"hasLabel": "ses-01",
"hasAge": 22.1,
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
},
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
"identifier": "nb:0f7fe93b-13b1-4ca7-9e58-b997a18ec9b9",
"hasLabel": "ses-02",
"hasAge": 23.2,
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
}
],
"schemaKey": "Subject"
},
{
"identifier": "nb:c46f7255-b47d-4d57-b06a-3e4d9c53bda6",
"identifier": "nb:73193f71-cd19-4b8c-ae73-abc882e9b688",
"hasLabel": "sub-04",
"hasAge": 21.1,
"hasSex": {
"identifier": "snomed:248152002",
"schemaKey": "Sex"
},
"isSubjectGroup": {
"identifier": "ncit:C94342",
"schemaKey": "SubjectGroup"
},
"hasAssessment": [
"hasSession": [
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
"identifier": "nb:962aa986-dbd7-4412-a180-49c0a24c9f87",
"hasLabel": "ses-01",
"hasAge": 21.1,
"hasSex": {
"identifier": "snomed:248152002",
"schemaKey": "Sex"
},
"isSubjectGroup": {
"identifier": "ncit:C94342",
"schemaKey": "SubjectGroup"
},
"hasAssessment": [
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
},
{
"identifier": "nb:8622fc66-013d-4675-a328-fdcccd4616b0",
"hasLabel": "ses-02",
"hasAge": 22.3,
"hasSex": {
"identifier": "snomed:248152002",
"schemaKey": "Sex"
},
"isSubjectGroup": {
"identifier": "ncit:C94342",
"schemaKey": "SubjectGroup"
},
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
}
],
"schemaKey": "Subject"
},
{
"identifier": "nb:1bbe85cf-a538-440b-b094-3edbaace68e3",
"identifier": "nb:cb8d7a96-fdec-425c-b0b5-9e9ac3c70e8c",
"hasLabel": "sub-05",
"hasAge": 42.5,
"hasSex": {
"identifier": "snomed:248153007",
"schemaKey": "Sex"
},
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
"hasSession": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
"identifier": "nb:1d7c30f5-cae9-43c9-a154-26dbe0029594",
"hasLabel": "ses-01",
"hasAge": 42.5,
"hasSex": {
"identifier": "snomed:248153007",
"schemaKey": "Sex"
},
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
"identifier": "nb:2401e418-6f9b-4113-9511-b1b9a332a5d0",
"hasLabel": "ses-02",
"hasAge": 43.2,
"hasSex": {
"identifier": "snomed:248153007",
"schemaKey": "Sex"
},
"hasDiagnosis": [
{
"identifier": "snomed:406506008",
"schemaKey": "Diagnosis"
}
],
"hasAssessment": [
{
"identifier": "cogatlas:trm_57964b8a66aed",
"schemaKey": "Assessment"
},
{
"identifier": "cogatlas:tsk_4a57abb949ece",
"schemaKey": "Assessment"
}
],
"schemaKey": "PhenotypicSession"
}
],
"schemaKey": "Subject"
Expand Down
Loading

0 comments on commit 519b076

Please sign in to comment.