Fix pip install of packages in requirement file (#239)

* Merge build and deploy to fix deploy problems

* Add nest-server requirements

* Fix nest-desktop and compose file

* Add v3.7

* Remove test

* Add v3.7 to readme

* Fix nestml version and add pygsl

* Install nestml fix for nest verssion

* Quick fix to issue with requirements file installation

src/3.8/Dockerfile

@@ -90,7 +90,13 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
     cd ${SRC_PATH} && \
     wget "https://github.com/nest/nest-simulator/archive/refs/tags/v${NEST_VERSION}.tar.gz" -P ${SRC_PATH} && \
     tar -xzf v${NEST_VERSION}.tar.gz && \
-    python3 -m pip install -r ${SRC_PATH}/nest-simulator-${NEST_VERSION}/doc/requirements.txt && \
+    # Installing the requirements_docs.txt stops at some time with an error
+    # Installing every package fix it.
+    python3 -m pip install sphinx>=6.2.1 sphinx_rtd_theme sphinx_autobuild sphinx_gallery sphinx-tabs && \
+    python3 -m pip install sphinx_design sphinx-material sphinx-copybutton sphinx-carousel && \
+    python3 -m pip install sphinx-notfound-page sphinxcontrib-mermaid sphinxcontrib-plantuml nbsphinx && \
+    python3 -m pip install  numpydoc example Image breathe csvkit docutils PyYAML>=4.2b1 tqdm yamllint && \
+    # RUN python3 -m pip install -r ${SRC_PATH}/nest-simulator-${NEST_VERSION}/requirements_docs.txt
     python3 -m pip install sphinx_gallery==0.10.1 'numpy<=1.26' && \
     chmod +x ${SRC_PATH}/nest-simulator-${NEST_VERSION}/build_support/install_music.sh && \
     ${SRC_PATH}/nest-simulator-${NEST_VERSION}/build_support/install_music.sh && \
@@ -119,6 +125,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
     python3 -m pip install --upgrade scipy && \
     python3 -m pip install --upgrade gsl wheel setuptools swig
 
+#Latest update to nestml v8.0.0-rc1
 RUN python3 -m pip install https://api.github.com/repos/nest/nestml/zipball/pull/1087/head
 
     # python3 -m pip install nestml==8.0.0rc1 && \

src/dev/Dockerfile

@@ -90,15 +90,23 @@ RUN python3 -m pip install --upgrade pip setuptools wheel mock
 RUN python3 -m pip install --force-reinstall --upgrade --no-binary=h5py h5py
 RUN ldconfig
 
-
-
 # Download NEST
 RUN cd ${SRC_PATH} && \
     wget https://github.com/nest/nest-simulator/archive/refs/heads/${NEST_VERSION}.tar.gz -P ${SRC_PATH} && \
     tar -xzf ${NEST_VERSION}.tar.gz
-RUN python3 -m pip install -r ${SRC_PATH}/nest-simulator-${NEST_VERSION}/doc/requirements.txt && \
-    python3 -m pip install sphinx_gallery==0.10.1
-# Install music
+
+# Installing the requirements_docs.txt stops at some time with an error
+# Installing every package fix it.
+RUN python3 -m pip install sphinx>=6.2.1 sphinx_rtd_theme sphinx_autobuild sphinx_gallery sphinx-tabs 
+RUN python3 -m pip install sphinx_design sphinx-material sphinx-copybutton sphinx-carousel 
+RUN python3 -m pip install sphinx-notfound-page sphinxcontrib-mermaid sphinxcontrib-plantuml nbsphinx
+RUN python3 -m pip install  numpydoc example Image breathe csvkit docutils PyYAML>=4.2b1 tqdm yamllint
+
+# RUN python3 -m pip install -r ${SRC_PATH}/nest-simulator-${NEST_VERSION}/requirements_docs.txt
+
+RUN python3 -m pip install sphinx_gallery==0.10.1
+
+    # Install music
 RUN chmod +x ${SRC_PATH}/nest-simulator-${NEST_VERSION}/build_support/install_music.sh && \
     ${SRC_PATH}/nest-simulator-${NEST_VERSION}/build_support/install_music.sh
 
@@ -136,7 +144,6 @@ RUN mkdir ${SRC_PATH}/nest-build && cd $_ && \
 
 # Install NESTML and more
 RUN python3 -m pip install --upgrade pip && \
-    python3 -m pip install -r ${SRC_PATH}/nest-simulator-${NEST_VERSION}/requirements.txt && \
     python3 -m pip install nest-desktop --pre && \
     python3 -m pip uninstall nestml -y && \
     python3 -m pip install --upgrade https://github.com/nest/nestml/archive/refs/heads/master.zip && \