v0.1.0.b1

Initial beta "release" to get packaging up and running.

What's Changed

• Refactor mcorr funcs by @ArjunPutcha in #1
• get CI working by @kushalkolar in #2
• Create yapf check by @kushalkolar in #8
• pytests for output paths mcorr, cnmf, cnmfe by @clewis7 in #10
• fix #15 by @kushalkolar in #17
• Get com coords by @ArjunPutcha in #9
• fixes #14 by @kushalkolar in #18
• Use black formater by @kushalkolar in #19
• use CAIMAN_TEMP to store mcorr memmap and then move back to parent dir by @kushalkolar in #22
• update CI pipelines by @kushalkolar in #27
• View mcorr shifts by @ArjunPutcha in #21
• Yet more pytests by @clewis7 in #29
• update workflows by @kushalkolar in #32
• lint with black by @kushalkolar in #33
• Fix bug to accept ixs_components param for updating spatial components by @ArjunPutcha in #34
• start docs, basic API documented by @kushalkolar in #35
• dev into master by @kushalkolar in #36
• example notebooks by @kushalkolar in #37
• update example nb by @kushalkolar in #42
• Even more pytests by @clewis7 in #43
• making caiman.run() common extension callbacks_finished arg optional by @clewis7 in #45
• master <- dev by @kushalkolar in #46
• new spec for batch item params, put algo params in key, tests pass by @kushalkolar in #50
• refactor batch item file management by @kushalkolar in #51
• cnmf extension for get residuals by @clewis7 in #47
• adding idx_component functionality to reconstructed movie extension by @clewis7 in #54
• fix typo by @ArjunPutcha in #59
• caiman extension to get input movie using pims or caiman.load_memmap by @kushalkolar in #60
• master <-- dev by @kushalkolar in #64
• splitting reconstructed movie into two functions by @clewis7 in #58
• creating cache for faster access to results of previous cnmf extension calls by @clewis7 in #62
• updating tests to cnmf, still need to upload to zenodo and fix download by @clewis7 in #73
• Api renaming by @kushalkolar in #79
• component indices parser, cache bug fix by @kushalkolar in #82
• Remove pyqt by @kushalkolar in #77
• docstrings, cleanup, more API renaming by @kushalkolar in #83
• add comments as column for batch dataframe, tests pass by @kushalkolar in #68
• lots-of-stuff <- master by @kushalkolar in #84
• custom temporal components for get_rcm() and kwargs are optional for caiman.run() by @kushalkolar in #85
• dfof, eval, other final things by @kushalkolar in #87
• better checks for parent data path by @kushalkolar in #88
• Doc examples by @kushalkolar in #91
• more docs stuff by @kushalkolar in #92
• try to make docs autobuild by @kushalkolar in #94
• things for windows compatibility by @kushalkolar in #95
• added caiman.remove_item(), caiman.get_children() and caiman.get_parent() by @kushalkolar in #98
• rename dataframe column "name" to "item_name" by @kushalkolar in #99
• started input movie methods, experimental for now by @kushalkolar in #101
• fixing threshold for cache test to pass CI pipeline by @clewis7 in #102
• use pandas 1.5.0rc0 by @kushalkolar in #104
• added get_params_diffs() feature, works by @kushalkolar in #112
• added caiman.save_to_disk() by @kushalkolar in #113
• last bits of features before initial beta release by @kushalkolar in #114
• organizing stuff for release by @kushalkolar in #110

New Contributors

• @ArjunPutcha made their first contribution in #1

Full Changelog: https://github.com/nel-lab/mesmerize-core/commits/v0.1.0.b1