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v2.0.4 #372

Merged
merged 16 commits into from
May 20, 2024
Merged

v2.0.4 #372

merged 16 commits into from
May 20, 2024

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ncborcherding
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dev level with master for v2.0.3 onward
#352 #342 getCirclize will now do the calculation enitrely using clones and not by group.by summarization. Also added included the include.self parameter to allow for the calculation with or without the slef to self comparison.

Still cannot control for clones across multiple group.by levels
 #357 Per discussion

Done so far: clonalAbundance, percentAA, percentGenes, percentKmer, percentVJ, positionalEntropy, positionalProperty

Still to do: clonalCompare
clonalDiversity
clonalHomeostasis
clonalLength
clonalOverlap
clonalProportion
clonalQuant
clonalRarefeaction
clonalScatter
clonalSizeDistribution
alluvialClones
clonalOccupy
clonalOverlay
Still to do: clonalCompare
clonalDiversity
clonalOverlap
clonalRarefeaction
clonalScatter
clonalSizeDistribution
alluvialClones
clonalOccupy
clonalOverlay
Complete all relevent functions for order.by parameter.
no more row integer index, detect where the NA row is and use all the others.
@ncborcherding ncborcherding merged commit 9f6ef41 into master May 20, 2024
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