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NCBI - National Center for Biotechnology Information/NLM/NIH

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  1. gprobe gprobe Public

    client app for the gRPC health-checking protocol

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Repositories

Showing 10 of 160 repositories
  • cwl-ngs-workflows-cbb Public

    A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

    ncbi/cwl-ngs-workflows-cbb’s past year of commit activity
    Common Workflow Language 24 10 0 0 Updated Jul 24, 2025
  • sra-tools Public

    SRA Tools

    ncbi/sra-tools’s past year of commit activity
    C 1,240 264 23 7 Updated Jul 24, 2025
  • ncbi-vdb Public

    ncbi-vdb

    ncbi/ncbi-vdb’s past year of commit activity
    C 92 42 10 2 Updated Jul 24, 2025
  • sra-human-scrubber Public

    An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.

    ncbi/sra-human-scrubber’s past year of commit activity
    Shell 49 10 3 0 Updated Jul 24, 2025
  • ncbi-cxx-toolkit-public Public

    NCBI C++ Toolkit package sources

    ncbi/ncbi-cxx-toolkit-public’s past year of commit activity
    C++ 74 35 0 0 Updated Jul 24, 2025
  • tree-tool Public

    Incremental building of phylogenetic distance trees

    ncbi/tree-tool’s past year of commit activity
    HTML 25 10 0 1 Updated Jul 23, 2025
  • ncbi-logging Public

    Log monitoring and gathering infrastructure to feed analytics

    ncbi/ncbi-logging’s past year of commit activity
    C++ 7 9 0 2 Updated Jul 23, 2025
  • pgap Public

    NCBI Prokaryotic Genome Annotation Pipeline

    ncbi/pgap’s past year of commit activity
    Common Workflow Language 344 96 1 0 Updated Jul 23, 2025
  • amr Public

    AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

    ncbi/amr’s past year of commit activity
    C++ 318 46 10 0 Updated Jul 22, 2025
  • cxx-toolkit Public
    ncbi/cxx-toolkit’s past year of commit activity
    HTML 21 Unlicense 51 0 0 Updated Jul 22, 2025
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