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@0x55555555 0x55555555 released this 09 Nov 08:53
· 79 commits to master since this release

Added

  • DatasetReader class for reading collections of pod5 files
  • Return index errors when querying invalid errors from API's
  • Added compression status to pod5 inspect summary <file>
  • Added environment override POD5_DISABLE_MMAP_OPEN to force non-mmapped opening of files.

Changed

  • Transfers dataframes used in subsetting / filter use categorical fields to reduce memory consumption
  • Polars version increased to ~=0.19
  • Documentation regarding positional arguments
  • Recursive search for files now traverses symbolic links and ignores hidden files
  • Write pod5 files using DirectIO on Linux platforms (performance)

Fixed

  • Fixed a bug in the build scripts that prevented iOS and Windows Conan packages from being uploaded.
  • convert to_fast5 writes byte encoded read_ids to match MinKNOW (was str)
  • Corrected the visibility of dependencies when building pod5 as a shared library.
  • num_minknow_events field description from int8 to uint64
  • ReadRecord.num_minknow_events return type-hint from float to int

Removed

  • Removed python3.7 support