v1.4.4

Changed

• tensorflow requirement to ~=2.2.2

Added

• R10.4 E8.1 consensus models for Guppy version 5.0.15.

v1.4.3

Fixed

• medaka tools now displays its help rather than an error.

Added

• `medaka tools download_models can download specific models.

v1.4.2

Fixed

• Missing sites in gVCF output.

Changed

• Rewrittern algorithm for determining VCF records from RNN outputs for clarity
  and speed.

v1.4.1

Fixed

• Inclusion of select models in distributions.

v1.4.0

Added

• Models for Guppy version 5.0.7.

v1.3.4

Fixed

• Issue whereby tensorflow would spawn many threads that do not exit.

v1.3.3

Fixed

• Added missing default option to arparse instance in smolecule command.
• Copy across contigs with no aligned reads during medaka stitch.
• Quote strings in bash scripts to allow filenames with spaces.

v1.3.2

Fixed

• Typo in medaka_consensus causing a syntax error.

v1.3.1

Added

• Option to output VCF record for all reference positions from
  medaka variant.

v1.3.0

Changed

• Haploid variant calling reverted to old-style methodology.

Fixed

• Early exits on error in medaka_consensus and medaka_variant.
• INFO field of VCFs is now correctly . when empty.