Merge branch 'r104_e81_models' into 'dev'

add R10.4 E8.1 models for v1.4.4 release See merge request research/medaka!505
nanoporetech · Sep 23, 2021 · cd07dc4 · cd07dc4
2 parents bb60621 + 600cac5
commit cd07dc4
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Showing 6 changed files with 17 additions and 3 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,8 +5,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [unreleased]
+
+## [v1.4.4]
 ### Changed
 - tensorflow requirement to ~=2.2.2
+### Added
+- R10.4 E8.1 consensus models for Guppy version 5.0.15.
 
 ## [v1.4.3]
 ### Fixed

diff --git a/medaka/__init__.py b/medaka/__init__.py
@@ -4,7 +4,7 @@
 import os
 import subprocess
 
-__version__ = "1.4.3"
+__version__ = "1.4.4"
 
 
 def check_minimap2_version():

diff --git a/medaka/data/r104_e81_fast_g5015_model.tar.gz b/medaka/data/r104_e81_fast_g5015_model.tar.gz
diff --git a/medaka/data/r104_e81_hac_g5015_model.tar.gz b/medaka/data/r104_e81_hac_g5015_model.tar.gz
diff --git a/medaka/data/r104_e81_sup_g5015_model.tar.gz b/medaka/data/r104_e81_sup_g5015_model.tar.gz
diff --git a/medaka/options.py b/medaka/options.py
@@ -21,8 +21,8 @@
     # r9 consensus
     'r941_min_fast_g507', 'r941_min_hac_g507', 'r941_min_sup_g507',
     'r941_prom_fast_g507', 'r941_prom_hac_g507', 'r941_prom_sup_g507',
-    # r10 consensus
-    'r103_fast_g507', 'r103_hac_g507', 'r103_sup_g507',
+    # r104 e81 consensus
+    'r104_e81_fast_g5015', 'r104_e81_hac_g5015', 'r104_e81_sup_g5015',
     # r9 variant calling
     'r941_prom_hac_snp_g507', 'r941_prom_hac_variant_g507',
 ]
@@ -35,6 +35,7 @@
     # r10 consensus
     'r10_min_high_g303', 'r10_min_high_g340',
     'r103_min_high_g345', 'r103_min_high_g360', 'r103_prom_high_g360',
+    'r103_fast_g507', 'r103_hac_g507', 'r103_sup_g507',
     # snp and variant - flipflop
     'r941_prom_snp_g303', 'r941_prom_variant_g303',
     'r941_prom_snp_g322', 'r941_prom_variant_g322',