feat: add nonlinear timing model #240
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davecwright3
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Adds new prior methods useful for nonlinear timing to timing.py Co-authored-by: Andrew Kaiser <[email protected]>
Co-authored-by: Andrew Kaiser <[email protected]>
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I broke down the monolithic commits into smaller, more logical commits. Also rebased onto master to include flake8 change. |
Updates tm_delay and timing_block with nonlinear timing. Also adds dm_block and other supporting methods. Co-authored-by: Andrew Kaiser <[email protected]>
Co-authored-by: Andrew Kaiser <[email protected]>
Adds new functionality for nonlinear timing, including specific jump proposals and restrictions to pulsar mass. Co-authored-by: Andrew Kaiser <[email protected]>
Co-authored-by: Andrew Kaiser <[email protected]>
Adds nonlinear timing model to single pulsar noise model. Co-authored-by: Andrew Kaiser <[email protected]>
Adds nonlinear timing model to model_general. Co-authored-by: Andrew Kaiser <[email protected]>
Co-authored-by: Andrew Kaiser <[email protected]>
Co-authored-by: Andrew Kaiser <[email protected]>
Co-authored-by: Andrew Kaiser <[email protected]>
davecwright3
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GH actions tests are failing because SciPy likes to make breaking changes on minor version increases. We should either pin SciPy or change the methods we call from SciPy. |
SciPy has deprecated interp2d used in the 2D KDE method. Their suggested backwards compatible method is not actually backwards compatible because it doesn't expose the same arguments to users, like the fill value outside of the domain. The suggested new methods take different inputs, so it is unclear if they will work with the empirical distribution code. This needs to be further tested before changing interp2d.
davecwright3
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This is a rework of #187.
I went through the commit history and pulled out any changes that weren't linting, updates from dev, etc (via https://github.com/Wilfred/difftastic AST diffs). The code is passing all tests locally, and the example notebook is producing output matching what @Hazboun6 had in the original PR.
This PR also includes documentation to go along with the new features.