Merge pull request #41 from mxochicale/35-itk-snap

35 - itk-snap
mxochicale · May 8, 2024 · e4fff08 · e4fff08
2 parents 1ed32f9 + 0aef059
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diff --git a/itk-snap/README.md b/itk-snap/README.md
@@ -1,43 +1,39 @@
 # ITK-SNAP Medical Image Segmentation Tool 
 
-## Source code 
-https://sourceforge.net/p/itk-snap/src/ci/master/tree/  
-https://sourceforge.net/projects/itk-snap/files/  
-
-## Download
-* itksnap-3.8.0-20190612-Linux-x86_64.tar.gz
-https://sourceforge.net/projects/itk-snap/files/itk-snap/3.8.0/itksnap-3.8.0-20190612-Linux-x86_64.tar.gz/download
-
-* itksnap-experimental-vtk9qt6-Linux-gcc64.tar.gz
-https://sourceforge.net/projects/itk-snap/files/itk-snap/Experimental/itksnap-experimental-vtk9qt6-Linux-gcc64.tar.gz
+## Download and Install
+``` 
+bash download-installation.bash
+```
 
+## Footprint
+```
+du -sh itksnap-4.*
+701M	itksnap-4.0.2-20230925-Linux-gcc64
+```
 
-## Install
-``` 
-cd $HOME/repositories/ITK-SNAP
-#wget https://sourceforge.net/projects/itk-snap/files/itk-snap/3.8.0/itksnap-3.8.0-20190612-Linux-x86_64.tar.gz
-#tar -xvzf itksnap-3.8.0-20190612-Linux-x86_64.tar.gz
-wget https://sourceforge.net/projects/itk-snap/files/itk-snap/Experimental/itksnap-experimental-vtk9qt6-Linux-gcc64.tar.gz
-tar -xvzf itksnap-experimental-vtk9qt6-Linux-gcc64.tar.gz
+## Datasets
+Site for datasets http://www.itksnap.org/pmwiki/pmwiki.php?n=Downloads.Data
+* Multi-modal brain tumor MRI [Zip archive (9.1 MB)] 
+* Brain diffusion MRI dataset  [Zip archive (10.6 MB)]
+```
+bash download-datasets.bash
 ```
 
 ## Usage
-
-* itksnap-4.0.0
+* `itksnap-4*`
 ```
-cd $HOME/repositories/ITK-SNAP/itksnap-4.0.0-alpha.3-20220203-Linux-gcc64/bin
+cd $HOME/Downloads/itksnap/itksnap-4*/bin
 ./itksnap
 ```
 
-![app](app400.png)
-
-
+* `itksnap-4*` with `diffusion.itksnap`
+![app](app.png)
 
-## Examples of datasets
-Site for datasets http://www.itksnap.org/pmwiki/pmwiki.php?n=Downloads.Data
-
-* Multi-modal brain tumor MRI [Zip archive (9.1 MB)] 
-* Brain diffusion MRI dataset  [Zip archive (10.6 MB)]
+## Source code 
+* https://github.com/pyushkevich/itksnap 
+* https://sourceforge.net/p/itk-snap/src/ci/master/tree/  
+* https://sourceforge.net/projects/itk-snap/files/  
+* https://sourceforge.net/projects/itk-snap/files/itk-snap/4.2.0/
 
 
 ## Issues 

diff --git a/itk-snap/app.png b/itk-snap/app.png
diff --git a/itk-snap/app400.png b/itk-snap/app400.png
diff --git a/itk-snap/download-datasets.bash b/itk-snap/download-datasets.bash
@@ -0,0 +1,14 @@
+##USAGE
+# bash download-datasets.bash
+# Site for datasets http://www.itksnap.org/pmwiki/pmwiki.php?n=Downloads.Data
+
+FILENAME0=diffusion.zip # Brain diffusion MRI dataset  [Zip archive (10.6 MB)]
+FILENAME1=braintumor.zip # Multi-modal brain tumor MRI [Zip archive (9.1 MB)] 
+
+cd ~/Downloads/
+mkdir -p itksnap && cd itksnap
+wget https://www.nitrc.org/frs/download.php/6161/$FILENAME0 -O $FILENAME0
+wget http://www.nitrc.org/frs/download.php/6176/$FILENAME1 -O $FILENAME1
+unzip $FILENAME0
+unzip $FILENAME1
+
diff --git a/itk-snap/download-installation.bash b/itk-snap/download-installation.bash
@@ -0,0 +1,18 @@
+# USAGE
+# bash download_installation.bash
+
+## LATEST VERSION
+# https://sourceforge.net/p/itk-snap/activity/
+
+## LOGS
+# itksnap-3.8.0-20190612-Linux-x86_64.tar.gz
+# itksnap-4.0.1-20230320-Linux-gcc64.tar.gz
+# itksnap-experimental-vtk9qt6-Linux-gcc64.tar.gz
+FILENAME=itksnap-nightly-rel_4.0-Linux-gcc64.tar.gz  #Length: 200943059 (192M) [application/x-gzip]
+
+cd ~/Downloads/
+mkdir -p itksnap && cd itksnap
+wget https://sourceforge.net/projects/itk-snap/files/itk-snap/Nightly/$FILENAME/download -O $FILENAME
+tar -xvzf $FILENAME
+
+