[WIP] Abstract XRF spectrum

[beteva]

Clean the AbstractXRFSpectrum.
Specific ESRF implementation, using PyMca as analysis program.

[github-actions]

Coverage Report •

File	Stmts	Miss	Cover	Missing
mxcubecore
CommandContainer.py	467	214	54%	94–95, 218–219, 378–389, 395–406, 422–430, 451–452, 462–463, 469–480, 488–509, 526–527, 539, 547, 589–590, 645–662, 665–676, 682–693, 708–716, 738–739, 749–750, 758–841, 846–863, 869–880, 891–892, 902–967
HardwareRepository.py	452	237	48%	49, 96, 99, 109, 120, 124, 131–140, 146–154, 165–170, 194–195, 201–204, 219, 228, 232–237, 285, 289–292, 312–313, 326, 372–375, 378, 385, 389–398, 424–425, 436–443, 453–457, 463–468, 474–480, 483, 487–492, 519–532, 546–547, 561–566, 578–584, 600–607, 613–619, 623–629, 633–639, 654, 662, 669–670, 676, 680, 684, 708–711, 722–727, 738–743, 754, 765–864, 871, 878–880, 883–900, 903–917, 936–992
Poller.py	127	60	53%	34–35, 39, 57–58, 107–108, 111, 117, 120, 123–129, 157–217
__version__.py	16	12	25%	9–28
mxcubecore/Command
Sardana.py	284	284	0%	21–502
Tango.py	173	89	49%	45–46, 57–61, 64–77, 80–96, 104–105, 113, 120, 122–135, 140, 192–199, 214–229, 235–238, 245–247, 255–260, 264–277, 281–288, 319–320, 327, 329, 331, 337–350, 353, 356
mxcubecore/HardwareObjects
Beamline.py	316	106	66%	146–160, 262–269, 302, 324, 368, 379, 401, 457, 469, 513, 524, 537, 559, 570, 581, 592, 603, 614, 625, 637, 652, 663, 676, 687, 702, 713, 724, 740, 756, 773–859, 866–876, 879, 882–893
BeamlineActions.py	207	207	0%	1–327
EDNACharacterisation.py	322	322	0%	1–518
GenericDiffractometer.py	707	363	49%	39–53, 121, 343–344, 354–357, 360–380, 385–386, 388, 393–394, 422–431, 439, 452–468, 472–473, 478–480, 490–492, 509, 512, 514, 516, 518, 520, 522, 526, 618, 623–625, 635, 649–654, 661, 668, 675, 683–705, 711–717, 721, 727, 733, 739, 745, 749, 755, 766–773, 786–787, 791–792, 800, 808, 813–841, 846–868, 872–889, 895–926, 934–961, 967–1003, 1007, 1011, 1021–1024, 1032–1071, 1075, 1079–1085, 1096, 1124, 1132–1133, 1140–1146, 1154–1157, 1165–1171, 1177–1182, 1188–1189, 1195, 1201–1205, 1211–1225, 1234, 1240, 1244, 1254–1266, 1270–1284, 1290, 1296, 1300, 1303, 1310, 1322–1333, 1337–1339, 1343–1344, 1348–1349, 1357, 1376–1381, 1387–1389, 1395–1420, 1426, 1432, 1435, 1439, 1443, 1446, 1449, 1452–1453, 1456–1474, 1477–1493, 1496–1499
ISARAMaint.py	103	18	83%	37–41, 63, 104–106, 185, 196, 198, 205–214
ISPyBClient.py	1344	1344	0%	1–2585
ISPyBRestClient.py	244	244	0%	4–599
LdapAuthenticator.py	102	102	0%	7–185
LimaEigerDetector.py	130	130	0%	4–313
MachCurrent.py	48	48	0%	21–99
Microdiff.py	304	304	0%	1–773
MiniDiff.py	613	613	0%	1–1122
MotorsNPosition.py	146	146	0%	21–284
QtGraphicsManager.py	1043	1043	0%	19–2319
QueueManager.py	207	207	0%	10–451
SampleView.py	295	91	69%	68, 74, 80, 83, 92, 101–106, 109, 157–163, 238, 325–332, 335–344, 347–353, 394, 397, 422–426, 430–435, 438–452, 466, 473–476, 483–486, 500, 503–504, 543–544, 550, 556–561, 568–569, 572, 575–594
SardanaMotor.py	134	134	0%	1–289
Session.py	174	79	55%	84, 98–99, 113, 149–176, 186–195, 202, 209, 222–228, 239–245, 263, 279–296, 309–323, 326–333, 341–349, 364–373, 380, 387, 394, 401, 408
TangoMotor.py	130	130	0%	19–240
TangoShutter.py	62	62	0%	21–145
XMLRPCServer.py	402	402	0%	8–731
XRFSpectrum.py	291	291	0%	1–424
XSDataMXCuBEv1_4.py	1692	1692	0%	7–2757
XSDataMXv1.py	11174 11174	0%	0%	7–18875
sample_centring.py	280	252	10%	12–37, 42, 49, 60–109, 125, 142, 144–146, 165, 186–193, 212–662
mxcubecore/HardwareObjects/Gphl
CollectEmulator.py	192	192	0%	3–378
GphlMessages.py	641	641	0%	3–1338
GphlWorkflow.py	1291	1291	0%	4–2949
GphlWorkflowConnection.py	632	632	0%	3–1265
Transcal2MiniKappa.py	79	79	0%	4–232
mxcubecore/HardwareObjects/Native
__init__.py	45	45	0%	3–136
mxcubecore/HardwareObjects/abstract
AbstractAuthenticator.py	13	13	0%	22–50
AbstractCollect.py	395	395	0%	21–890
AbstractDetector.py	128	33	74%	92–93, 105–111, 127, 140, 154, 161–162, 169, 176, 197, 204, 257–258, 281–282, 322, 329, 332–340, 352–355
AbstractEnergyScan.py	95	95	0%	1–216
AbstractMachineInfo.py	27	5	81%	49, 56, 63, 70, 77
AbstractMultiCollect.py	682	682	0%	1–1363
AbstractXRFSpectrum.py	119	17	86%	64, 98–99, 129–134, 139, 176–178, 223–227
mxcubecore/HardwareObjects/mockup
ActuatorMockup.py	41	3	93%	64, 105, 107
BeamMockup.py	57	12	79%	104–105, 114–115, 124–126, 132–133, 136–137, 140
BeamlineActionsMockup.py	46	46	0%	1–76
DetectorMockup.py	30	5	83%	55, 61, 64–66
EnergyScanMockup.py	191	191	0%	1–474
ISPyBClientMockup.py	208	117	44%	94, 97–101, 105–131, 145–213, 221, 240, 243, 255–260, 263, 278–282, 298–305, 321, 333, 343, 354, 370, 375–381, 590, 603, 606, 609, 612, 615, 626, 629, 638–642, 645, 658, 661, 668, 683, 686, 689, 692, 695, 698, 701, 704, 725
ISPyBRestClientMockup.py	103	103	0%	4–336
MotorMockup.py	56	3	95%	75, 113, 124
MultiCollectMockup.py	182	182	0%	1–316
SampleChangerMockup.py	111	20	82%	44, 47, 58, 73–87, 117, 123, 126, 129, 132, 135, 183
XRFSpectrumMockup.py	9	1	89%	42
XrayCentringMockup.py	29	29	0%	18–66
mxcubecore/model
crystal_symmetry.py	84	84	0%	4–583
queue_model_objects.py	1455	1154	21%	37–38, 52–63, 67, 73, 83, 90, 97, 108–111, 123, 130, 141–146, 149–157, 160, 163–170, 173–180, 183, 186, 189, 192, 195, 198, 201, 204, 208, 211, 214, 217, 220–228, 231–232, 235–237, 242–246, 249, 256–258, 263–265, 270–273, 276–277, 282–309, 312–313, 316, 319–324, 327, 330–335, 338–345, 348–465, 468–487, 490–500, 510–514, 518, 521–536, 539, 542, 545, 548, 551, 554, 557–564, 598–627, 631, 635–639, 667–669, 672, 675, 678, 681, 684, 690, 693, 696, 699, 702, 705–708, 711–714, 719, 722–723, 726–739, 747–748, 756–757, 765, 773–795, 798–799, 802, 805, 810, 815–828, 831, 850–869, 873, 876, 879, 884, 887, 890–894, 897, 904, 909–912, 920–921, 929–935, 938, 947–988, 991, 1027–1029, 1032–1034, 1039–1056, 1059, 1062, 1065, 1068, 1071, 1074, 1077, 1080, 1083–1084, 1087–1098, 1101–1108, 1111, 1116–1135, 1144–1161, 1164, 1167, 1170, 1173–1174, 1177–1183, 1186, 1189, 1192, 1195, 1198, 1201–1208, 1211, 1216–1219, 1224–1253, 1256, 1259, 1262–1264, 1267, 1286–1296, 1299, 1302, 1305, 1308, 1311, 1314, 1317–1320, 1333–1355, 1374–1389, 1392, 1395, 1398, 1401, 1404, 1407, 1410, 1413–1416, 1426–1435, 1438, 1441, 1446–1449, 1458–1472, 1498–1512, 1515–1531, 1534, 1551–1553, 1556–1567, 1570–1571, 1574–1575, 1585–1642, 1645–1652, 1655–1666, 1669–1676, 1679, 1682–1695, 1698, 1703–1743, 1746–1751, 1754, 1793, 1798–1817, 1820, 1823, 1841–1852, 1855–1857, 1900–1902, 1905–1909, 1912, 1915–1929, 1932, 1935, 1938, 1941, 1944, 1947, 1952–1956, 1959, 1962, 1965, 1970–2048, 2052–2083, 2086–2088, 2120–2225, 2257–2299, 2307–2429, 2434, 2439, 2444, 2449, 2454, 2459, 2462, 2467, 2471–2476, 2481–2486, 2502–2517, 2535–2538, 2548–2567, 2570, 2576, 2579, 2584–2587, 2631–2712, 2731–2738, 2769–2777, 2805–2851, 2855–2858
mxcubecore/queue_entry
__init__.py	22	22	0%	19–106
advanced_connector.py	33	33	0%	19–88
base_queue_entry.py	434	434	0%	19–920
characterisation.py	136	136	0%	19–258
energy_scan.py	104	104	0%	19–236
sample_centring.py	55	55	0%	19–122
xrf_spectrum.py	59	59	0%	19–138
TOTAL	60676	56025	8%

Tests	Skipped	Failures	Errors	Time
1933	0 💤	0 ❌	0 🔥	1m 47s ⏱️

[rhfogh]

Looks fine

[marcus-oscarsson]

Still WIP @beteva ?

[beteva]

Yes. I'll rebase and remove the WIP then.