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Include Ensembl Tark API for reference retrieval #21
Commits on Mar 4, 2024
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Xiaoyun Liu committed
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Xiaoyun Liu committed
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Second attempt to use Tark: add json.parse
Xiaoyun Liu committedMar 4, 2024 Configuration menu - View commit details
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Commits on Mar 13, 2024
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Retrieve transcript info with version number using Tark
Xiaoyun Liu committedMar 13, 2024 Configuration menu - View commit details
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Commits on Mar 26, 2024
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Xiaoyun Liu committed
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merge tark during fetching reference
Xiaoyun Liu committedMar 26, 2024 Configuration menu - View commit details
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Xiaoyun Liu committed
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fix error when using tark in normalise function
Xiaoyun Liu committedMar 26, 2024 Configuration menu - View commit details
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fix retrive order: fetch from tark directly
Xiaoyun Liu committedMar 26, 2024 Configuration menu - View commit details
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Commits on Mar 29, 2024
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fix bug: retrieve earlier version
Xiaoyun Liu committedMar 29, 2024 Configuration menu - View commit details
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Commits on Apr 2, 2024
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Xiaoyun Liu committed
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Commits on Apr 5, 2024
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Xiaoyun Liu committed
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Commits on Apr 8, 2024
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update fetch function and add tests
Xiaoyun Liu committedApr 8, 2024 Configuration menu - View commit details
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Xiaoyun Liu committed
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Xiaoyun Liu committed
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Commits on Apr 16, 2024
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re-orgnised parser for ensembl json
Xiaoyun Liu committedApr 16, 2024 Configuration menu - View commit details
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Commits on Apr 24, 2024
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Xiaoyun Liu committed
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Xiaoyun Liu committed
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Commits on Apr 25, 2024
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Add option ensembl_tark and ensembl_rest in CLI
Xiaoyun Liu committedApr 25, 2024 Configuration menu - View commit details
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Commits on Apr 29, 2024
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Implement retrieve sequence and annotation for model type
Xiaoyun Liu committedApr 29, 2024 Configuration menu - View commit details
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Fix sequence retrieval bug, add check and doc string in parse
Xiaoyun Liu committedApr 29, 2024 Configuration menu - View commit details
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Fix sequence retrieval bug, add check and doc string in parse
Xiaoyun Liu committedApr 29, 2024 Configuration menu - View commit details
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Fix sequence retrieval bug, add check and doc string in parse
Xiaoyun Liu committedApr 29, 2024 Configuration menu - View commit details
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Clean up and implement ensembl in reference source
Xiaoyun Liu committedApr 29, 2024 Configuration menu - View commit details
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Xiaoyun Liu committed
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Commits on Apr 30, 2024
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Xiaoyun Liu committed
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