build based on 76da65e

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-05-14T01:42:04","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-05-31T17:22:12","documenter_version":"1.3.0"}}

dev/index.html

@@ -9,4 +9,4 @@
 <iframe width="750" height="350" src="https://www.youtube.com/embed/IENq5imeIzE" title="Collisions between unbound solitons with 1- and 2- species of dark matter and equal phase" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe>
 </center></li></ul><ul><li>N. Glennon, N. Musoke, E. O. Nadler, C. Prescod-Weinstein, and R. H. Wechsler, <em>Dynamical friction in self-interacting ultralight dark matter</em>, Phys. Rev. D 109, no.6, 6, 063501 (2024) <a href="https://doi.org/10.1103/PhysRevD.109.063501">doi:10.1103/PhysRevD.109.063501</a>, <a href="https://arXiv.org/abs/2312.07684">[arXiv:2312.07684 [astro-ph.CO]]</a>.<center>
 <iframe width="750" height="350" src="https://www.youtube.com/embed/27LzOpsgXxs" title="Dynamical friction in self-interacting ultralight axion dark matter, Figure 6" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe>
-</center></li></ul></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/install/">Installation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Tuesday 14 May 2024 01:42">Tuesday 14 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+</center></li></ul></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/install/">Installation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 31 May 2024 17:22">Friday 31 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/man/init/index.html

@@ -22,4 +22,4 @@
 
 # output
 
-true</code></pre></div><a class="docs-sourcelink" target="_blank" href="https://github.com/musoke/UltraDark.jl/blob/a2a161acc9d23565c4f34c9f1b38f3733d5e3012/src/initialise.jl#L10-L55">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../overview/">« Overview</a><a class="docs-footer-nextpage" href="../output/">Output Configuration »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Tuesday 14 May 2024 01:42">Tuesday 14 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+true</code></pre></div><a class="docs-sourcelink" target="_blank" href="https://github.com/musoke/UltraDark.jl/blob/76da65ed20e5c2171d0ca91f35e5a1273ea9c260/src/initialise.jl#L10-L55">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../overview/">« Overview</a><a class="docs-footer-nextpage" href="../output/">Output Configuration »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 31 May 2024 17:22">Friday 31 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/man/install/index.html

@@ -3,4 +3,4 @@
 
 pkg> dev UltraDark.jl
 
-pkg&gt; test UltraDark</code></pre><p>This may take a while to run. There are a lot of packages to compile and some of the tests are of real simulations.</p><p>If the tests succeed, you&#39;re all set!</p><p>Next, check out the <a href="../overview/#Overview"><code>overview</code></a> or to jump to running the <a href="https://github.com/musoke/UltraDark.jl/tree/main/examples">example notebooks</a> in <a href="https://github.com/JuliaLang/IJulia.jl">IJulia</a>.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../">« Home</a><a class="docs-footer-nextpage" href="../overview/">Overview »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Tuesday 14 May 2024 01:42">Tuesday 14 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+pkg&gt; test UltraDark</code></pre><p>This may take a while to run. There are a lot of packages to compile and some of the tests are of real simulations.</p><p>If the tests succeed, you&#39;re all set!</p><p>Next, check out the <a href="../overview/#Overview"><code>overview</code></a> or to jump to running the <a href="https://github.com/musoke/UltraDark.jl/tree/main/examples">example notebooks</a> in <a href="https://github.com/JuliaLang/IJulia.jl">IJulia</a>.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../">« Home</a><a class="docs-footer-nextpage" href="../overview/">Overview »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 31 May 2024 17:22">Friday 31 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/man/overview/index.html

@@ -18,7 +18,7 @@
 [ Info: Reached time 1.0
 [ Info: Reached time 1.5000000000000009
 [ Info: Reached time 2.0
-  4.077440 seconds (40.20 k allocations: 746.612 MiB, 6.25% gc time, 0.93% compilation time)</code></pre><p>We initialised the soliton with a nonzero <code>velocity</code>. Let&#39;s check if the soliton moved during the simulation.</p><pre><code class="language-julia hljs">argmax(grids.ρx)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">CartesianIndex(45, 32, 32)</code></pre><p>Yes, it did – the maximum is now at a different location.</p><p>We can also check this by loading output files from <code>output_dir</code> and plotting them.</p><pre><code class="language-julia hljs">using CairoMakie
+  3.835580 seconds (40.20 k allocations: 746.612 MiB, 0.40% gc time, 0.96% compilation time)</code></pre><p>We initialised the soliton with a nonzero <code>velocity</code>. Let&#39;s check if the soliton moved during the simulation.</p><pre><code class="language-julia hljs">argmax(grids.ρx)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">CartesianIndex(45, 33, 33)</code></pre><p>Yes, it did – the maximum is now at a different location.</p><p>We can also check this by loading output files from <code>output_dir</code> and plotting them.</p><pre><code class="language-julia hljs">using CairoMakie
 using LaTeXStrings
 using NPZ
 
@@ -29,4 +29,4 @@
     ax = Axis(fig[1, i], title=L&quot;$t = %$(output_times[t_index])$&quot;, aspect=DataAspect())
     heatmap!(grids.x[:, 1, 1], grids.y[1, :, 1], rho[:, :, Int(resol//2)])
 end
-fig</code></pre><p><img src="../overview.png" alt/></p><p>After understanding this overview you may want to browse the <a href="https://github.com/musoke/UltraDark.jl/tree/main/examples">example notebooks</a> to see more complex simulations and analysis.</p><p>Please <a href="https://github.com/musoke/UltraDark.jl/issues/new">open an issue</a> if you run into problems or have feature requests.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../install/">« Installation</a><a class="docs-footer-nextpage" href="../init/">Soliton Initialisation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Tuesday 14 May 2024 01:42">Tuesday 14 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+fig</code></pre><p><img src="../overview.png" alt/></p><p>After understanding this overview you may want to browse the <a href="https://github.com/musoke/UltraDark.jl/tree/main/examples">example notebooks</a> to see more complex simulations and analysis.</p><p>Please <a href="https://github.com/musoke/UltraDark.jl/issues/new">open an issue</a> if you run into problems or have feature requests.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../install/">« Installation</a><a class="docs-footer-nextpage" href="../init/">Soliton Initialisation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.3.0 on <span class="colophon-date" title="Friday 31 May 2024 17:22">Friday 31 May 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>