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MetaCache v0.5.0
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@muellan muellan released this 23 Oct 14:00
· 565 commits to master since this release
v0.5.0
6c98408
  • New merge mode for merging results of multiple, independent queries. This can be used to save memory by splitting up the set of reference genomes into several databases. These can then be queried in succession and the results can be merged to obtain a classification based on the whole set of reference genomes.
    ./metacache query 1.db reads.fa -tophits -queryids -lowest species -out res1.txt 
    ./metacache query 2.db reads.fa -tophits -queryids -lowest species -out res2.txt
    ./metacache query 3.db reads.fa -tophits -queryids -lowest species -out res3.txt
    ./metacache merge res1.txt res2.txt res3.txt -taxonomy ncbi_taxonomy -out res1+2+3.txt
  • tweaked classification algorithm in case of multiple equally good matches in several targets
  • small fixes
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