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Split out SocialDistancing, CaseIsolation, HouseholdQuarantine, Place… #314

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Split out SocialDistancing, CaseIsolation, HouseholdQuarantine, Place… #314

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34 changes: 17 additions & 17 deletions src/CalcInfSusc.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -11,24 +11,24 @@
//// These functions consider one person only. A person has an infectiousness that is independent of other people. Slightly different therefore than susceptibility functions.
double CalcHouseInf(int j, unsigned short int ts)
{
return ((HOST_ISOLATED(j) && (Hosts[j].digitalContactTraced != 1)) ? P.CaseIsolationHouseEffectiveness : 1.0)
* ((Hosts[j].digitalContactTraced==1) ? P.DCTCaseIsolationHouseEffectiveness : 1.0)
* ((HOST_QUARANTINED(j) && (Hosts[j].digitalContactTraced != 1) && (!(HOST_ISOLATED(j))))? P.HQuarantineHouseEffect : 1.0)
return ((HOST_ISOLATED(j) && (Hosts[j].digitalContactTraced != 1)) ? P.current_case_isolation_.household_effect_ : 1.0)
* ((Hosts[j].digitalContactTraced==1) ? P.current_digital_contact_tracing_.household_effect_ : 1.0)
* ((HOST_QUARANTINED(j) && (Hosts[j].digitalContactTraced != 1) && (!(HOST_ISOLATED(j))))? P.current_household_quarantine_.household_effect_ : 1.0)
* P.HouseholdDenomLookup[Households[Hosts[j].hh].nhr - 1] * CalcPersonInf(j, ts);
}
double CalcPlaceInf(int j, int k, unsigned short int ts)
{
return ((HOST_ISOLATED(j) && (Hosts[j].digitalContactTraced != 1)) ? P.CaseIsolationEffectiveness : 1.0)
* ((Hosts[j].digitalContactTraced==1) ? P.DCTCaseIsolationEffectiveness : 1.0)
* ((HOST_QUARANTINED(j) && (Hosts[j].digitalContactTraced != 1) && (!(HOST_ISOLATED(j)))) ? P.HQuarantinePlaceEffect[k] : 1.0)
return ((HOST_ISOLATED(j) && (Hosts[j].digitalContactTraced != 1)) ? P.current_case_isolation_.spatial_and_place_effect_ : 1.0)
* ((Hosts[j].digitalContactTraced==1) ? P.current_digital_contact_tracing_.spatial_and_place_effect_ : 1.0)
* ((HOST_QUARANTINED(j) && (Hosts[j].digitalContactTraced != 1) && (!(HOST_ISOLATED(j)))) ? P.current_household_quarantine_.place_effect_[k] : 1.0)
* ((Hosts[j].inf == InfStat_Case) ? P.SymptPlaceTypeContactRate[k] : 1.0)
* P.PlaceTypeTrans[k] / P.PlaceTypeGroupSizeParam1[k] * CalcPersonInf(j, ts);
}
double CalcSpatialInf(int j, unsigned short int ts)
{
return ((HOST_ISOLATED(j) && (Hosts[j].digitalContactTraced != 1)) ? P.CaseIsolationEffectiveness : 1.0)
* ((Hosts[j].digitalContactTraced==1) ? P.DCTCaseIsolationEffectiveness : 1.0)
* ((HOST_QUARANTINED(j) && (Hosts[j].digitalContactTraced != 1) && (!(HOST_ISOLATED(j)))) ? P.HQuarantineSpatialEffect : 1.0)
return ((HOST_ISOLATED(j) && (Hosts[j].digitalContactTraced != 1)) ? P.current_case_isolation_.spatial_and_place_effect_ : 1.0)
* ((Hosts[j].digitalContactTraced==1) ? P.current_digital_contact_tracing_.spatial_and_place_effect_ : 1.0)
* ((HOST_QUARANTINED(j) && (Hosts[j].digitalContactTraced != 1) && (!(HOST_ISOLATED(j)))) ? P.current_household_quarantine_.spatial_effect_ : 1.0)
* ((Hosts[j].inf == InfStat_Case) ? P.SymptSpatialContactRate : 1.0)
* P.RelativeSpatialContact[HOST_AGE_GROUP(j)]
* CalcPersonInf(j, ts); /* *Hosts[j].spatial_norm */
Expand All @@ -46,20 +46,20 @@ double CalcPersonInf(int j, unsigned short int ts)
double CalcHouseSusc(int ai, unsigned short int ts, int infector, int tn)
{
return CalcPersonSusc(ai, ts, infector, tn)
* ((Mcells[Hosts[ai].mcell].socdist == 2) ? ((Hosts[ai].esocdist_comply) ? P.EnhancedSocDistHouseholdEffectCurrent : P.SocDistHouseholdEffectCurrent) : 1.0)
* (Hosts[ai].digitalContactTraced==1 ? P.DCTCaseIsolationHouseEffectiveness : 1.0);
* ((Mcells[Hosts[ai].mcell].socdist == 2) ? ((Hosts[ai].esocdist_comply) ? P.current_social_distancing_.enhanced_household_effect_ : P.current_social_distancing_.household_effect_) : 1.0)
* (Hosts[ai].digitalContactTraced==1 ? P.current_digital_contact_tracing_.household_effect_ : 1.0);
}
double CalcPlaceSusc(int ai, int k, unsigned short int ts, int infector, int tn)
{
return ((HOST_QUARANTINED(ai) && (Hosts[ai].digitalContactTraced != 1)) ? P.HQuarantinePlaceEffect[k] : 1.0)
* ((Mcells[Hosts[ai].mcell].socdist == 2) ? ((Hosts[ai].esocdist_comply) ? P.EnhancedSocDistPlaceEffectCurrent[k] : P.SocDistPlaceEffectCurrent[k]) : 1.0)
* (Hosts[ai].digitalContactTraced==1 ? P.DCTCaseIsolationEffectiveness : 1.0);
return ((HOST_QUARANTINED(ai) && (Hosts[ai].digitalContactTraced != 1)) ? P.current_household_quarantine_.place_effect_[k] : 1.0)
* ((Mcells[Hosts[ai].mcell].socdist == 2) ? ((Hosts[ai].esocdist_comply) ? P.current_social_distancing_.enhanced_place_effect_[k] : P.current_social_distancing_.place_effect_[k]) : 1.0)
* (Hosts[ai].digitalContactTraced==1 ? P.current_digital_contact_tracing_.spatial_and_place_effect_ : 1.0);
}
double CalcSpatialSusc(int ai, unsigned short int ts, int infector, int tn)
{
return ((HOST_QUARANTINED(ai) && (Hosts[ai].digitalContactTraced != 1)) ? P.HQuarantineSpatialEffect : 1.0)
* ((Mcells[Hosts[ai].mcell].socdist == 2) ? ((Hosts[ai].esocdist_comply) ? P.EnhancedSocDistSpatialEffectCurrent : P.SocDistSpatialEffectCurrent) : 1.0)
* (Hosts[ai].digitalContactTraced==1 ? P.DCTCaseIsolationEffectiveness : 1.0);
return ((HOST_QUARANTINED(ai) && (Hosts[ai].digitalContactTraced != 1)) ? P.current_household_quarantine_.spatial_effect_ : 1.0)
* ((Mcells[Hosts[ai].mcell].socdist == 2) ? ((Hosts[ai].esocdist_comply) ? P.current_social_distancing_.enhanced_spatial_effect_ : P.current_social_distancing_.spatial_effect_) : 1.0)
* (Hosts[ai].digitalContactTraced==1 ? P.current_digital_contact_tracing_.spatial_and_place_effect_ : 1.0);
}
double CalcPersonSusc(int ai, unsigned short int ts, int infector, int tn)
{
Expand Down
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