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FA2020 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program

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BISB Bootcamp 2020

Welcome to the course website for the Bioinformatics & Systems Biology Fall Quarter 2020 Bootcamp for incoming students to our doctoral program!

Course Instructors

This course is entirely taught by graduate students! There are three main instructors for the course from the Bioinformatics & Systems Biology program. The main instructors teach the majority of "learning modules", along with lectures that contain helpful graduate school knoweldge. There are also quite a few guest instructors that will also be joining the course!

Main Instructors

Name Email Address Year and Track in BISB Advisor
Owen Chapman [email protected] 4th Year, Department of Biomedical Informatics Lukas Chavez
Cameron Martino [email protected] 3rd Year, Bioinformatics & Systems Biology Rob Knight
Michelle Franc Ragsac [email protected] 3rd Year, Bioinformatics & Systems Biology Emma Farley

Guest Instructors

Name Year and Program Advisor
Alex Tankka 2nd Year, Biomedical Sciences Gene Yeo
Sara Elmsaouri 3rd Year, Biomedical Sciences Gene Yeo
Danielle Schafer 3rd Year, Biomedical Sciences Gene Yeo
Alexander Wenzel 4th Year, Biomedical Informatics Jill Mesirov
Clarence Mah 3rd Year, Bioinformatics & Systems Biology Gene Yeo
Hannah Carter
Maya Gosztyla 2nd Year, Biomedical Sciences Gene Yeo
Noorsher Ahmed 4th Year, Biomedical Sciences Gene Yeo
Margaret Burns 4th Year, Biomedical Sciences Gene Yeo
Adam Officer 3rd Year, Biomedical Informatics Olivier Harismendy
Pablo Tamayo
George Armstrong 3rd Year, Bioinformatics & Systems Biology Rob Knight
Gibraan Rahman 3rd Year, Bioinformatics & Systems Biology Rob Knight

Goals of the Bootcamp

This week-long Bootcamp aims to:

  • Introduce new students to the Bioinformatics & Systems Biology program, its faculty and students, and research opportunities at the University of California, San Diego
  • Foster student community and collaboration among students of the first-year class and to students in upper classes
  • Convey the bar for the core curriculum and key classes, as well as the research excitement and work ethic characteristic of the program's best students
  • Provide incoming students with an opportunity to remedy deficiencies before taking the core classes

Bootcamp Schedule

The complete schedule for this year's Bootcamp can be found at the following link: https://docs.google.com/document/d/1W_75n4eZAH89gtQodiZyzS3p-ubc8VppcQoLgO7li5g/edit?usp=sharing.

Additionally, each day# folder within this repo has the schedule for that specific day.

Website Organization

Each day of the Bootcamp is separated into a different folder within this repository. There are two types of folders: presentation folders (e.g., intro_presentations/) which contain more general information about the program, and module folders (e.g., module1a_bench-to-terminal and module1b_genetics-101) that contain technical information and workshops.

BISB-Bootcamp-2020/
├── README.md # This document you're reading right now!
├── day1
│   ├── intro_presentations
│   ├── module1a_bench-to-terminal
│   └── module1b_genetics-101
├── day2
│   ├── intro_presentations
│   ├── module2_genomic-technologies
│   ├── module3a_best-software-practices-biologists
│   └── module3b_wet-lab-sausage
├── day3
│   ├── intro_presentations
│   └── module4_hpc-crash-course
├── day4
│   ├── intro_presentations
│   ├── module5_bioinformatics-introduction
│   ├── module6_pair-programming
│   ├── module7_machine-learning-101
│   └── BMS_extra-Image-processing
├── day5
    ├── intro_presentations
    └── module8_software-engineering-on-a-team

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FA2020 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program

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