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DAVID
Users need to register with DAVID here. Please be aware that you will not receive any confirmation email.
Currently gene symbols are not working and therefore gene names are matched to Ensembl Gene ids.
from: https://david.ncifcrf.gov/content.jsp?file=WS.html
A job with more than 3000 genes to generate gene or term cluster report will not be handled by DAVID due to resource limit.
No more than 200 jobs in a day from one user or computer.
DAVID Team reserves right to suspend any improper uses of the web service without notice.
Please realise that Flaski's DAVID App performs a getChartReport and therefore not included in the 3000 genes list size limit.
https://www.youtube.com/watch?v=ewmsQrq0yZU
https://www.youtube.com/watch?v=VyE1g1E6dU8
When using DAVID through Flaski you should consider citing DAVID web services as well as DAVID itself.
DAVID web services:
Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki DAVID-WS: A Stateful Web Service to Facilitate Gene/Protein List Analysis Bioinformatics 2012 doi:10.1093/bioinformatics/bts251
DAVID:
Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc. 2009;4(1):44-57.
Huang DW, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009;37(1):1-13. [PubMed]