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Update README
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moshi4 committed Sep 22, 2023
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Expand Up @@ -64,17 +64,15 @@ User can download example dataset ([singlelambda.zip](https://github.com/moshi4/

## Output Contents

- `summary_all_gene_family.[png|jpg|svg|pdf]`
Summary of all expansion/contraction gene family result
- **summary_all_gene_family.[png|jpg|svg|pdf]**
Summary of all expansion/contraction gene family result (from `*_clade_result.txt`)

![summary_all_gene_family.png](https://raw.githubusercontent.com/moshi4/CafePlotter/main/examples/images/summary_all_gene_family.png)

- `summary_significant_gene_family.[png|jpg|svg|pdf]`
Summary of significant expansion/contraction gene family result

![summary_significant_gene_family.png](https://raw.githubusercontent.com/moshi4/CafePlotter/main/examples/images/summary_significant_gene_family.png)

- `gene_family/{FamilyID}_gene_family.[png|jpg|svg|pdf]`
Significant :red_circle:expansion/:large_blue_circle:contraction gene family result
- **gene_family/{FamilyID}_gene_family.[png|jpg|svg|pdf]**
Significant expansion(*red*)/contraction(*blue*) gene family result

![gene_family.png](https://raw.githubusercontent.com/moshi4/CafePlotter/main/examples/images/gene_family/2_gene_family.png)

- **result_summary.tsv** ([example](https://github.com/moshi4/CafePlotter/blob/main/examples/result_summary.tsv))
Significant expansion/contraction result summary for each family and taxon

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