Genes in model viewer that are in pathways should be highlighted

[mellybelly]

We need some way of knowing in the model viewer when a phenotypically similar gene is annotated to a pathway. Basically I want to know how do the most phenotypically similar genes relate to one another? Right now I have to search KEGG outside the system, this should be doable inside our system.

Even better - anywhere in the system- be able to select a set of entities (genes, phenotypes, diseases, models), infer their related genes for the latter three, and display using cytoscape plugin any relationships between them.

[harryhoch]

Let’s discus. Might make sense to rol our own instead of using cytoscape
On Mar 28, 2014, at 4:57 PM, Melissa Haendel [email protected] wrote:

We need some way of knowing in the model viewer when a phenotypically similar gene is annotated to a pathway. Basically I want to know how do the most phenotypically similar genes relate to one another? Right now I have to search KEGG outside the system, this should be doable inside our system.

Even better - anywhere in the system- be able to select a set of entities (genes, phenotypes, diseases, models), infer their related genes for the latter three, and display using cytoscape plugin any relationships between them.

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Harry Hochheiser
University of Pittsburgh
Department of Biomedical Informatics
[email protected] 412 648 9300

[nlwashington]

As for the first issue (highlighting genes in the same pathway), @mellybelly is this necessary for the June release?

[harryhoch]

Not yet implemented, but moving discussion to monarch-initiative/phenogrid#132