Update MATSim

[nkuehnel]

• add scenario cutout class with open todos
• Finished scenario-cutout (untested)
• bind NewScoreAssigner as singleton
• scenario cutout resolved null edge cases
• update TODOS
• change service timeWindow
• Bump avro.version from 1.11.3 to 1.12.0
• pass money and additionalScore events through to carrierScoringFunction
• pass VehicleEnters/LeavesTrafficEvent events through to carrierScoringFunction
• inline method
• Bump it.unimi.dsi:fastutil from 8.5.13 to 8.5.14
• add a test for msa with controller
• Bump com.google.protobuf:protobuf-java from 4.27.2 to 4.28.0
• prebooking stop: check for expected pickups to prevent pickup and abandonment in the same second
• Outsourced VehicleSelection and GetGenerationRates
• Implemented Allocator to resolve service duration problem (untested)
• feat: DiscreteModeChoiceModule write utilities as an output.
• fix: add missing ExtractPlanUtilities class
• fix: default value of writeUtilitiesInterval
• Removed multithreading and debugged error-values in NetworkChangeEvents
• Resolved null error
• Fixed jspritIteration value-initialization bug
• drt: be less strict with vehicle ids set equality in preplanned scenarios
• drt: allow final stay task without requests in preplanned scenarios
• fix parking proxy bug
• Bump org.apache.commons:commons-lang3 from 3.14.0 to 3.17.0
• Bump org.locationtech.jts:jts-core from 1.19.0 to 1.20.0
• Bump com.github.luben:zstd-jni from 1.5.6-3 to 1.5.6-5
• Bump org.slf4j:slf4j-api from 2.0.13 to 2.0.16
• use correct transit modes in pt pseudo network (Use correct transit modes in pt pseudo network matsim-org/matsim-libs#3453)
• Adding geometry-free zone-system (Adding geometry-free zone-system matsim-org/matsim-libs#3423)
• Bump org.apache.commons:commons-compress from 1.26.2 to 1.27.1
• Bump org.apache.maven.plugins:maven-failsafe-plugin from 3.3.1 to 3.5.0
• Bump org.apache.maven.plugins:maven-install-plugin from 3.1.2 to 3.1.3
• Bump org.apache.maven.plugins:maven-javadoc-plugin from 3.7.0 to 3.10.0
• revert to old pseudo network creator
• Bump com.google.guava:guava from 33.2.1-jre to 33.3.0-jre
• use CsvOptions.detectDelimiter instead of hard coded ';' (use CsvOptions.detectDelimiter instead of hard coded ';' matsim-org/matsim-libs#3466)
• Add individual params model for network freespeed (Add additional network freespeed model matsim-org/matsim-libs#3467)
• Bump org.codehaus.mojo:buildnumber-maven-plugin from 3.2.0 to 3.2.1
• Bump log4j.version from 2.23.1 to 2.24.0
• change inputs of class by using globFile
• add carrier analysis to small scale commercial generation
• drt: add back in max ride time to offer acceptor
• dvrp: allow fixed dvrp offline travel time estimation
• Bump io.grpc:grpc-all from 1.65.1 to 1.66.0
• avoid maven trouble by adding io.opentelemetry-sdk explicitly
• feat: allow defining initial link id of vehicle explicitly
• Update DvrpConfigGroup.java
• Bump io.opentelemetry:opentelemetry-sdk from 1.40.0 to 1.42.1
• Bump com.google.errorprone:error_prone_annotations from 2.29.2 to 2.31.0
• Bump org.apache.maven.plugins:maven-surefire-plugin from 3.3.1 to 3.5.0
• format log massages
• add more general carrier analysis
• clean up
• update carrier_stats to new version
• update carrier_stats to new version
• Bump org.mockito:mockito-core from 5.12.0 to 5.13.0
• build(deps-dev): bump net.bytebuddy:byte-buddy from 1.14.18 to 1.15.1
• chore: default zoning params
• feat: flexibilize structure of drt route constraints (feat: flexibilize structure of drt route constraints matsim-org/matsim-libs#3479)
• Introduce service tasks
• Created a viability assurance for carrier plans with small vehicle fleet
• Put the carrier-creation back into the main class
• Outsourced VehicleSelection
• Specified event-classes
• build(deps): bump org.apache.maven.plugins:maven-surefire-report-plugin
• code review and cleanup
• add todos regarding facilities
• Add attribute filter to trip analysis (Add attribute filter to trip analysis matsim-org/matsim-libs#3486)
• Refactored carrier-analysis and created tests
• Resolved FileSystemError
• drt: add constructor for optimization constraint supplier
• add TODO
• change pom for freight analysis
• add two additional constructors and add separate carriers only analysis
• removed copied files to move the original files afterward
• update simple tests
• make class independent of application contrib
• move freight analysis into freight contrib
• add buffer try catch
• add comments
• add number of not handled jobs
• formatting
• use the current analysis version
• use delimiter and add comment
• update file for new carrier analysis
• update file for new carrier analysis
• use configurable delimiter for all classes
• build(deps): bump com.google.protobuf:protobuf-java
• formatting
• change parameters of method
• add possible solution for serviceTime selection
• add TODO
• add different cases for the carriers to add new plans
• formatting
• renamed variables
• add configGroup
• add turn restriction test case
• add simpler turn restriction test case
• renaming, code organization
• make addPlan and setSelectedPlan behave according to their name.
• make addPlan and setSelectedPlan behave according to their name.
• fix test: setPlan as selected (and not only add it)
• Implemented the replanning loop (still not fully working)
• clean up
• add log massages and clean up
• simplify and update the population sampling option
• clean up
• noise: handle activities without coord
• restructure commercial specification interface
• formatting
• rename method
• formatting
• rename
• add current version of solving all carriers
• adjust method
• use recent method
• add method to check if all jobs are handled
• also add shipment carrier for testing
• comment
• use new CarrierUtils method
• refactor CleanPopulation (refactor CleanPopulation matsim-org/matsim-libs#3496)
• Added Javadocs
• Added local test setup (only temporary)
• Added a converter for xyt csv files to avro
• build(deps): bump com.google.errorprone:error_prone_annotations
• introduce DashboardUtils for some standardization
• Freespeed and facility bugfix
• Added tests for full-cutout
• Added remaining tests
• additional JavaDocs and CheckStyle
• Updated reference events file in test
• Removed old code/comments
• Moved odMatrix, resultingDataPerZone, linksPerZone into class attributes, for smaller method-headers
• Javadoc and formatting
• Outsourced methods for unhandled-services into UnhandledServicesSolution
• minor fixes
• Resolved missing TODOs and added facility cutout
• revert unintended change
• Trip sankey diagram (Trip sankey diagram matsim-org/matsim-libs#3504)
• write edge attributes from sumo into the features csv (Write additional attributes when using SUMO network converter matsim-org/matsim-libs#3508)
• Transit Viewer Dashboard - Custom Route Types (Transit Viewer Dashboard - Custom Route Types matsim-org/matsim-libs#3507)
• allow for Controller with double l
• fix cadyts memory leak (Fix memory leak in cadyts matsim-org/matsim-libs#3512)
• fix: considering the case when current element is a leg when aborting rejected prebooking. (fix: considering the case when current element is a leg when aborting a rejected prebooking request matsim-org/matsim-libs#3505)
• chore(drt:PlusOneRebalancingStrategy): checking that target link id exists (chore(drt:PlusOneRebalancingStrategy): checking that target link id exists matsim-org/matsim-libs#3503)
• fix glob patterns in dashboards for runs without run id (fix glob patterns in dashboards for runs without run id matsim-org/matsim-libs#3515)
• support different crs and add some error checking (Support CRS transformations for scenario cutout  matsim-org/matsim-libs#3517)
• typical vehicle categories for noise analysis
• updates tests for freight analysis to use more example inputs
• formatting
• reduce iterations for test
• try to fix test
• remove usage of path to fix tests
• use new analysis version
• Add matsim.tempDir property for specifying ImageIO cache directory
• Move specification of MATSim temp dir to OutputDirectoryHierarchy
• Add test case
• Assert that matsimTempDir is not null
• update test for both model types
• change serviceTimeSelection and remove from interface
• Additional transit schedule validations (Additional transit schedule validations matsim-org/matsim-libs#3524)
• build(deps): bump com.google.protobuf:protobuf-java
• Avoid creating unnecessary travel time calculators (Avoid creating unnecessary travel time calculators matsim-org/matsim-libs#3525)
• clean up
• Add tests for storage capacity under queue and kinematicWaves traffic dynamics (Add tests some tests for QueueWithBuffer matsim-org/matsim-libs#3533)
• Fix PtScoringTest on Windows
• solve windows related problems in drt-extensions-tests
• interpret person specific asc as offset in addition to the subpopulation's asc (interpret person specific asc as offset in addition to the subpopulation's asc matsim-org/matsim-libs#3537)
• change output dir
• Extend trip analysis (Extend trip analysis matsim-org/matsim-libs#3540)
• Consider stationary agents in scenario cut-out (Consider stationary agents in scenario cut-out matsim-org/matsim-libs#3541)
• build(deps): bump io.grpc:grpc-all from 1.66.0 to 1.68.1
• use files from main output directory instead of from last iteration
• fix some edge cases when routing on networks with turn restrictions
• improve consistency checks (Update VSP Consistency checker matsim-org/matsim-libs#3547)
• add exception in certain situations
• TODO comment
• update service time selection
• formatting
• Inline xml writing into Event class (Inline xml writing into Event class matsim-org/matsim-libs#3539)
• Don't assume car network mode as default (Don't assume car network mode as default matsim-org/matsim-libs#3532)
• add qsim modes to default traffic dashboard (add qsim modes to default traffic dashboard matsim-org/matsim-libs#3551)
• compute noise damages only for activities that are inside the specified grid
• carry on stopAreaId to derived TransitStopFacilities and set stopAreaId to the original TransitStopFacility when not present yet (carry on stopAreaId to derived TransitStopFacilities and set stopArea… matsim-org/matsim-libs#3554)
• defaults for networkModesToIgnore + consistency checks/warnings
• Add more linktypes to the SUMO converter (Add more linktypes to the SUMO converter matsim-org/matsim-libs#3559)
• add networkMode to defaultVehicleType (add networkMode to defaultVehicleType matsim-org/matsim-libs#3560)
• use fix output names for analysis
• Pt pax volumes into pt dashboard (Pt pax volumes into pt dashboard matsim-org/matsim-libs#3552)
• update default vehicleTypes incl. HBEFA categories and updated costs
• feat: make chargers attributable (feat: make chargers attributable matsim-org/matsim-libs#3565)
• feat: generalize multimodal link chooser (feat: generalize multimodal link chooser matsim-org/matsim-libs#3536)
• flush only at the end
• introduce now necessary network mode to generated vehicles
• Deprecate withHoles options for 'TrafficDynamics'. Also, we have deprecated everything except INFLOW_FROM_FDIAG in InflowCapacitySetting
• feat(dvrp): cached free-speed matrices (feat(dvrp): cached free-speed matrices matsim-org/matsim-libs#3567)
• Update pom.xml
• update log massage
• rename method
• rename method
• add configurable implementation of job duration calculation
• update method of cutting jobs in possible parts
• update combineJobs method and ad related test
• Fix: Non-deterministic behaviour of SwissRailRaptor (Fix: Non-deterministic behaviour of SwissRailRaptor matsim-org/matsim-libs#3568)
• relocate method
• update interface and implementation
• Improve SquareGridZoneSystem performance
• Bugfix
• Remove redundant zoneToLinksMap
• add zonal rejection (rates) to output
• change output dir
• Renamed packaged in line with freight and vsp’s logistics
• Update trigger for DTD deployment job. Run on merged PRs; fix syntax for target path.
• formatting. Commit is mainly done to trigger deploy-dtd workflow.
• add (example) network file for logistics to matsim-examples needs to be done before the code base, because otherwise it is not available for the tests on matsim-libs :(
• Fix error in deploy-dtds.yaml
• Add empty line to trigger deployment job
• Update deploy-dtds.yaml
• remove empty line to trigger workflow