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Mathieu Scheltienne
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| # Makefile for Sphinx documentation | ||
| # Minimal makefile for Sphinx documentation | ||
| # | ||
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| # You can set these variables from the command line. | ||
| SPHINXOPTS = -nWT --keep-going | ||
| SPHINXBUILD = sphinx-build | ||
| PAPER = | ||
| # You can set these variables from the command line, and also | ||
| # from the environment for the first two. | ||
| SPHINXOPTS ?= | ||
| SPHINXBUILD ?= sphinx-build | ||
| SOURCEDIR = . | ||
| BUILDDIR = _build | ||
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| # User-friendly check for sphinx-build | ||
| ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1) | ||
| $(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/) | ||
| endif | ||
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| # Internal variables. | ||
| PAPEROPT_a4 = -D latex_paper_size=a4 | ||
| PAPEROPT_letter = -D latex_paper_size=letter | ||
| ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . | ||
| # the i18n builder cannot share the environment and doctrees with the others | ||
| I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . | ||
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| .PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext | ||
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| # Put it first so that "make" without argument is like "make help". | ||
| help: | ||
| @echo "Please use \`make <target>' where <target> is one of" | ||
| @echo " html to make standalone HTML files" | ||
| @echo " dirhtml to make HTML files named index.html in directories" | ||
| @echo " singlehtml to make a single large HTML file" | ||
| @echo " pickle to make pickle files" | ||
| @echo " json to make JSON files" | ||
| @echo " htmlhelp to make HTML files and a HTML help project" | ||
| @echo " qthelp to make HTML files and a qthelp project" | ||
| @echo " devhelp to make HTML files and a Devhelp project" | ||
| @echo " epub to make an epub" | ||
| @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" | ||
| @echo " latexpdf to make LaTeX files and run them through pdflatex" | ||
| @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx" | ||
| @echo " text to make text files" | ||
| @echo " man to make manual pages" | ||
| @echo " texinfo to make Texinfo files" | ||
| @echo " info to make Texinfo files and run them through makeinfo" | ||
| @echo " gettext to make PO message catalogs" | ||
| @echo " changes to make an overview of all changed/added/deprecated items" | ||
| @echo " xml to make Docutils-native XML files" | ||
| @echo " pseudoxml to make pseudoxml-XML files for display purposes" | ||
| @echo " linkcheck to check all external links for integrity" | ||
| @echo " doctest to run all doctests embedded in the documentation (if enabled)" | ||
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| clean: | ||
| -rm -rf $(BUILDDIR)/* | ||
| -rm -rf generated/* | ||
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| html_stable: | ||
| $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) _build/html_stable | ||
| @echo | ||
| @echo "Build finished. The HTML pages are in _build/html_stable." | ||
|
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| html: | ||
| $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html | ||
| @echo | ||
| @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." | ||
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| html-noplot: | ||
| $(SPHINXBUILD) -D plot_gallery=0 -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html | ||
| @echo | ||
| @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." | ||
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| dirhtml: | ||
| $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml | ||
| @echo | ||
| @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." | ||
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| singlehtml: | ||
| $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml | ||
| @echo | ||
| @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." | ||
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| pickle: | ||
| $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle | ||
| @echo | ||
| @echo "Build finished; now you can process the pickle files." | ||
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| json: | ||
| $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json | ||
| @echo | ||
| @echo "Build finished; now you can process the JSON files." | ||
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| htmlhelp: | ||
| $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp | ||
| @echo | ||
| @echo "Build finished; now you can run HTML Help Workshop with the" \ | ||
| ".hhp project file in $(BUILDDIR)/htmlhelp." | ||
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| qthelp: | ||
| $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp | ||
| @echo | ||
| @echo "Build finished; now you can run "qcollectiongenerator" with the" \ | ||
| ".qhcp project file in $(BUILDDIR)/qthelp, like this:" | ||
| @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/project-template.qhcp" | ||
| @echo "To view the help file:" | ||
| @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/project-template.qhc" | ||
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| devhelp: | ||
| $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp | ||
| @echo | ||
| @echo "Build finished." | ||
| @echo "To view the help file:" | ||
| @echo "# mkdir -p $$HOME/.local/share/devhelp/project-template" | ||
| @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/project-template" | ||
| @echo "# devhelp" | ||
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| epub: | ||
| $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub | ||
| @echo | ||
| @echo "Build finished. The epub file is in $(BUILDDIR)/epub." | ||
|
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| latex: | ||
| $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | ||
| @echo | ||
| @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." | ||
| @echo "Run \`make' in that directory to run these through (pdf)latex" \ | ||
| "(use \`make latexpdf' here to do that automatically)." | ||
|
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| latexpdf: | ||
| $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | ||
| @echo "Running LaTeX files through pdflatex..." | ||
| $(MAKE) -C $(BUILDDIR)/latex all-pdf | ||
| @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." | ||
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| latexpdfja: | ||
| $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex | ||
| @echo "Running LaTeX files through platex and dvipdfmx..." | ||
| $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja | ||
| @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." | ||
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| text: | ||
| $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text | ||
| @echo | ||
| @echo "Build finished. The text files are in $(BUILDDIR)/text." | ||
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| man: | ||
| $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man | ||
| @echo | ||
| @echo "Build finished. The manual pages are in $(BUILDDIR)/man." | ||
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| texinfo: | ||
| $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo | ||
| @echo | ||
| @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." | ||
| @echo "Run \`make' in that directory to run these through makeinfo" \ | ||
| "(use \`make info' here to do that automatically)." | ||
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| info: | ||
| $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo | ||
| @echo "Running Texinfo files through makeinfo..." | ||
| make -C $(BUILDDIR)/texinfo info | ||
| @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." | ||
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| gettext: | ||
| $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale | ||
| @echo | ||
| @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." | ||
|
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| changes: | ||
| $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes | ||
| @echo | ||
| @echo "The overview file is in $(BUILDDIR)/changes." | ||
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| linkcheck: | ||
| $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck | ||
| @echo | ||
| @echo "Link check complete; look for any errors in the above output " \ | ||
| "or in $(BUILDDIR)/linkcheck/output.txt." | ||
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| doctest: | ||
| $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest | ||
| @echo "Testing of doctests in the sources finished, look at the " \ | ||
| "results in $(BUILDDIR)/doctest/output.txt." | ||
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| xml: | ||
| $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml | ||
| @echo | ||
| @echo "Build finished. The XML files are in $(BUILDDIR)/xml." | ||
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| pseudoxml: | ||
| $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml | ||
| @echo | ||
| @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml." | ||
| @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) | ||
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| view: | ||
| @python -c "import webbrowser; webbrowser.open_new_tab('file://$(PWD)/_build/html/index.html')" | ||
| .PHONY: help Makefile | ||
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| show: view | ||
| # Catch-all target: route all unknown targets to Sphinx using the new | ||
| # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). | ||
| %: Makefile | ||
| @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| .. NOTE: we use cross-references to highlight new functions and classes. | ||
| Please follow the examples below, so the changelog page will have a link to | ||
| the function/class documentation. | ||
| .. NOTE: there are 3 separate sections for changes, based on type: | ||
| - "Enhancements" for new features | ||
| - "Bugs" for bug fixes | ||
| - "API changes" for backward-incompatible changes | ||
| .. NOTE: You can use the :pr:`xx` and :issue:`xx` role to x-ref to a GitHub PR | ||
| or issue from this project. | ||
| .. include:: ./authors.inc | ||
|
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| Version 0.3 | ||
| =========== | ||
|
|
||
| - Add functions for annotating and labeling ICA components in BIDS format :func:`mne_icalabel.annotation.write_components_tsv`, :func:`mne_icalabel.annotation.mark_component` (:pr:`60` by `Adam Li`_) | ||
| - Fix shape of ``'y_pred_proba'`` output from :func:`mne_icalabel.label_components` (:pr:`36` by `Mathieu Scheltienne`_) | ||
| - Add a warning if the ICA decomposition provided does not match the expected decomposition by ``ICLabel`` (:pr:`42` by `Mathieu Scheltienne`_) | ||
| - Fix extraction of PSD feature from ``ICLabel`` model on epochs by (:pr:`64` by `Mathieu Scheltienne`_) | ||
| - Fix ICLabel topographic features on ICA fitted with a channel selection performed by ``picks`` (:pr:`68` by `Mathieu Scheltienne`_) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| .. NOTE: we use cross-references to highlight new functions and classes. | ||
| Please follow the examples below, so the changelog page will have a link to | ||
| the function/class documentation. | ||
| .. NOTE: there are 3 separate sections for changes, based on type: | ||
| - "Enhancements" for new features | ||
| - "Bugs" for bug fixes | ||
| - "API changes" for backward-incompatible changes | ||
| .. NOTE: You can use the :pr:`xx` and :issue:`xx` role to x-ref to a GitHub PR | ||
| or issue from this project. | ||
| .. include:: ./authors.inc | ||
|
|
||
| Version 0.3 | ||
| =========== | ||
|
|
||
| - Adding an experimental GUI to facilitate the labeling of ICA components (:pr:`66` by `Adam Li`_ and `Mathieu Scheltienne`_) | ||
| - Improve test coverage and documentation (:pr:`94` by `Mathieu Scheltienne`_) | ||
| - Ignore the ``RuntimeWarning`` issued by the grid inteprolation for ICLabel topographic feature (:pr:`69` by `Mathieu Scheltienne`_) | ||
| - Add topographic feature using MNE with `~mne_icalabel.features.get_topomaps` (:pr:`71` by `Anand Saini`_ and `Mathieu Scheltienne`_) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| .. NOTE: we use cross-references to highlight new functions and classes. | ||
| Please follow the examples below, so the changelog page will have a link to | ||
| the function/class documentation. | ||
| .. NOTE: there are 3 separate sections for changes, based on type: | ||
| - "Enhancements" for new features | ||
| - "Bugs" for bug fixes | ||
| - "API changes" for backward-incompatible changes | ||
| .. NOTE: You can use the :pr:`xx` and :issue:`xx` role to x-ref to a GitHub PR | ||
| or issue from this project. | ||
| .. include:: ./authors.inc | ||
|
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| Version 0.4 | ||
| =========== | ||
|
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| - Add ``strict_label`` keyword argument to :func:`mne_icalabel.annotation.mark_component` to enable users to input labels that are not part of the accepted ICLabel key words (:pr:`101` by `Adam Li`_) |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,4 @@ | ||
| .. _Adam Li: https://github.com/adam2392 | ||
| .. _Mathieu Scheltienne: https://github.com/mscheltienne | ||
| .. _Jacob Feitelberg: https://github.com/jacobf18 | ||
| .. _Anand Saini: https://github.com/anandsaini024 |
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