Merge pull request #1 from mll-lab/add_scan_fluidx_plate_with_tecan_s…

…canner

feat: add scan fluidx plate with tecan scanner logic

.github/workflows/autoformat.yml

@@ -16,7 +16,7 @@ jobs:
         with:
           coverage: none
           extensions: mbstring
-          php-version: 7.4
+          php-version: 8.1
 
       - run: composer install --no-interaction --no-progress --no-suggest
 
@@ -52,7 +52,7 @@ jobs:
         with:
           coverage: none
           extensions: mbstring
-          php-version: 7.4
+          php-version: 8.1
 
       - run: composer install --no-interaction --no-progress --no-suggest
 
@@ -63,3 +63,25 @@ jobs:
       - uses: stefanzweifel/git-auto-commit-action@v4
         with:
           commit_message: Apply php-cs-fixer changes
+
+  rector:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          ref: ${{ github.head_ref }}
+
+      - uses: shivammathur/setup-php@v2
+        with:
+          coverage: none
+          extensions: mbstring
+          php-version: 8.1
+
+      - run: composer install --no-interaction --no-progress --no-suggest
+
+      - run: vendor/bin/rector process
+
+      - uses: stefanzweifel/git-auto-commit-action@v4
+        with:
+          commit_message: Apply rector changes

.github/workflows/continuous-integration.yml

@@ -5,6 +5,8 @@ on:
   push:
     branches:
       - master
+  schedule:
+    - cron: '0 0 * * *'
 
 name: "Continuous Integration"
 
@@ -23,7 +25,7 @@ jobs:
         with:
           coverage: none
           extensions: mbstring
-          php-version: 7.4
+          php-version: 8.1
 
       - name: "Validate composer.json and composer.lock"
         run: composer validate --strict
@@ -42,7 +44,7 @@ jobs:
         with:
           coverage: none
           extensions: mbstring
-          php-version: 7.4
+          php-version: 8.1
 
       - name: "Install locked dependencies with composer"
         run: composer install --no-interaction --no-progress --no-suggest
@@ -51,7 +53,7 @@ jobs:
         run: vendor/bin/phpstan analyse --configuration=phpstan.neon
 
   tests:
-    name: "Tests"
+    name: "Tests - PHP ${{ matrix.php-version }}, Illuminate ${{ matrix.illuminate }}, ${{ matrix.dependencies }}"
 
     runs-on: ubuntu-latest
 
@@ -60,11 +62,16 @@ jobs:
         php-version:
           - 7.4
           - 8.0
-
+          - 8.1
         dependencies:
           - lowest
-          - locked
           - highest
+        illuminate:
+          - ^8
+          - ^9
+        exclude:
+          - php-version: 7.4
+            illuminate: ^9
 
     steps:
       - name: "Checkout"
@@ -77,6 +84,9 @@ jobs:
           extensions: mbstring
           php-version: ${{ matrix.php-version }}
 
+      - name: "Install illuminate"
+        run: composer require "illuminate/support:${{ matrix.illuminate }}" --no-interaction --no-update
+
       - name: "Install lowest dependencies with composer"
         if: matrix.dependencies == 'lowest'
         run: composer update --prefer-lowest --no-interaction --no-progress --no-suggest
@@ -106,7 +116,7 @@ jobs:
         with:
           coverage: pcov
           extensions: mbstring
-          php-version: 7.4
+          php-version: 8.1
 
       - name: "Install locked dependencies with composer"
         run: composer install --no-interaction --no-progress --no-suggest
@@ -134,10 +144,10 @@ jobs:
         with:
           coverage: pcov
           extensions: mbstring
-          php-version: 7.4
+          php-version: 8.1
 
       - name: "Install locked dependencies with composer"
         run: composer install --no-interaction --no-progress --no-suggest
 
       - name: "Run mutation tests with infection/infection"
-        run: vendor/bin/infection --ignore-msi-with-no-mutations --min-covered-msi=100 --min-msi=100
+        run: vendor/bin/infection

CHANGELOG.md

@@ -7,6 +7,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## Unreleased
 
+## v1.0.0
+
 ### Added
 
--
+- Add class `FluidXPlate` as a container for the scanned rackId and the scanned wells associated with a Coordinate (96-well format) from `mll-lab/microplate`
+- Add class `TecanScanner` to parse a raw scan result string into a `FluidXPlate`

composer.json

@@ -16,23 +16,26 @@
   },
   "require": {
     "php": "^7.4 || ^8",
-    "illuminate/support": "^7 || ^8",
-    "mll-lab/microplate": "^3.5",
+    "illuminate/support": "^8 || ^9",
+    "mll-lab/microplate": "^3.6",
     "mll-lab/php-utils": "^1.2",
+    "rector/rector": "^0.13.6",
     "thecodingmachine/safe": "^1"
   },
   "require-dev": {
     "ergebnis/composer-normalize": "^2",
     "infection/infection": "~0.25",
     "jangregor/phpstan-prophecy": "^1",
     "mll-lab/php-cs-fixer-config": "^4.3",
+    "nunomaduro/larastan": "^0.7 || ^1",
+    "orchestra/testbench": "^6 || ^7",
     "phpstan/extension-installer": "^1",
     "phpstan/phpstan": "^1",
     "phpstan/phpstan-deprecation-rules": "^1",
     "phpstan/phpstan-phpunit": "^1",
     "phpstan/phpstan-strict-rules": "^1",
     "phpunit/phpunit": "^9",
-    "symfony/var-dumper": "^5",
+    "symfony/var-dumper": "^5 || ^6",
     "thecodingmachine/phpstan-safe-rule": "^1.1"
   },
   "autoload": {
@@ -49,8 +52,10 @@
     ]
   },
   "config": {
-    "platform": {
-      "php": "7.4.24"
+    "allow-plugins": {
+      "infection/extension-installer": true,
+      "ergebnis/composer-normalize": true,
+      "phpstan/extension-installer": true
     },
     "preferred-install": "dist",
     "sort-packages": true