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Retrieve segmentation results and populate job parameters #178

Merged
merged 24 commits into from
Mar 11, 2024
Merged

Retrieve segmentation results and populate job parameters #178

merged 24 commits into from
Mar 11, 2024

Commits on Mar 8, 2024

  1. Put Tiled client refresh into its own callback

    @Wiebke
    Wiebke committed Mar 8, 2024
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  2. Remove unused stores

    @Wiebke
    Wiebke committed Mar 8, 2024
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  3. Adapt result retrieval to store element 

    from the previously used dropdown that was populated by name match
    @Wiebke
    Wiebke committed Mar 8, 2024
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  4. Add place holder for dvc results link

    @Wiebke
    Wiebke committed Mar 8, 2024
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  5. Delete existing annotations json

    @Wiebke
    Wiebke committed Mar 8, 2024
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  6. Assemble parameters for training job 

    Includes some better error handling for mask export and parameter retrieval
    @Wiebke
    Wiebke committed Mar 8, 2024
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  7. 🐛 Fix icon typo and parameter assembly

    @Wiebke
    Wiebke committed Mar 8, 2024
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  8. Add parameters to inference

    @Wiebke
    Wiebke committed Mar 8, 2024
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  9. Replace single result store by 2

    @Wiebke
    Wiebke committed Mar 8, 2024
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  10. Populate result stores on dropdown change

    @Wiebke
    Wiebke committed Mar 8, 2024
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  11. Add number of classes to model parameters

    @Wiebke
    Wiebke committed Mar 8, 2024
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  12. Add example script for copying mask as result

    @Wiebke
    Wiebke committed Mar 8, 2024
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  13. 🐛 Fix default export location

    @Wiebke
    Wiebke committed Mar 8, 2024
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Commits on Mar 9, 2024

  1. 🐛 Fix copy mask script (all bools inverted)

    @Wiebke
    Wiebke committed Mar 9, 2024
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  2. 🐛 Always check subflows for results 

    In case of training, we find initial partial results under the flow id of the first child.
In case of inference, we find final fully segmented results under the flow id of the second child
    @Wiebke
    Wiebke committed Mar 9, 2024
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  3. 🐛 Slice into array when copying

    @Wiebke
    Wiebke committed Mar 9, 2024
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  4. Add conda Prefect flows

    @Wiebke
    Wiebke committed Mar 9, 2024
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  5. 🐛 Guard against None for string params

    @Wiebke
    Wiebke committed Mar 9, 2024
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  6. Add missing network parameter

    @Wiebke
    Wiebke committed Mar 9, 2024
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  7. Update .env.example for conda flows

    @Wiebke
    Wiebke committed Mar 9, 2024
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Commits on Mar 10, 2024

  1. Add default values for weights and dilation array

    @Wiebke
    Wiebke committed Mar 10, 2024
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  2. Change val_pct range from 0-100 to 0-1

    @Wiebke
    Wiebke committed Mar 10, 2024
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  3. 🐛 Test if shapes exist before editing them 

    Switching to pan-and-zoom gave a key error for `shapes` when no annotation had been added yet
    @Wiebke
    Wiebke committed Mar 10, 2024
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Commits on Mar 11, 2024

  1. Change slider and switch styles

    @Wiebke
    Wiebke committed Mar 11, 2024
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