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Save pixelated masks to Tiled #172

Merged
merged 17 commits into from
Mar 6, 2024
Merged

Save pixelated masks to Tiled #172

merged 17 commits into from
Mar 6, 2024

Commits on Feb 28, 2024

  1. Rename tiled_dataset.data to tiled_dataset.data_client 

    Consistent with naming in other projects
    @Wiebke
    Wiebke committed Feb 28, 2024
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  2. Set up data loader for input and results and add separate mask handler 

    for exporting and loading mask, to replace all annotation loading functionality through the JSON file
    @Wiebke
    Wiebke committed Feb 28, 2024
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  3. Generate overlay colormap based on selected colors 

    Resolves mlexchange#169
    @Wiebke
    Wiebke committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. 💥 Change class labels to be 0-based instead of 1-based

    @Wiebke
    Wiebke committed Feb 29, 2024
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  2. 🐛 Use mapped index when accessing segmented frames with annotations

    @Wiebke
    Wiebke committed Feb 29, 2024
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  3. Save masks to Tiled on job submission

    @Wiebke
    Wiebke committed Feb 29, 2024
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Commits on Mar 1, 2024

  1. Change values of unlabeled pixels to -1

    @Wiebke
    Wiebke committed Mar 1, 2024
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  2. Restructure meta-data generation to remove redundancies

    @Wiebke
    Wiebke committed Mar 1, 2024
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  3. Sort mask slices by index to ensure consistent order

    @Wiebke
    Wiebke committed Mar 1, 2024
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Commits on Mar 2, 2024

  1. Add .dockerignore ignoring .env

    @Wiebke
    Wiebke committed Mar 2, 2024
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  2. Add example script that saves a mask plot based on a given uri

    @Wiebke
    Wiebke committed Mar 2, 2024
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Commits on Mar 3, 2024

  1. Include data_uri in mask meta data

    @Wiebke
    Wiebke committed Mar 3, 2024
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  2. 🐛 Fix export of free-forms for class with index 0

    @Wiebke
    Wiebke committed Mar 3, 2024
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  3. ✨ Use hash as key for masks instead of randomly generated uuid

    @Wiebke
    Wiebke committed Mar 3, 2024
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  4. Check for unlabled label name and add color for unlabled pixels in pl… 

    …otting
    @Wiebke
    Wiebke committed Mar 3, 2024
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  5. Capture mask_uri for job submission

    @Wiebke
    Wiebke committed Mar 3, 2024
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Commits on Mar 4, 2024

  1. Use canonicaljson instead of json.dumps(..., sort_keys=True) for … 

    …hashing
    @Wiebke
    Wiebke committed Mar 4, 2024
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