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beta-0.6.0

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@mklarqvist mklarqvist released this 28 Jun 11:26
· 110 commits to master since this release
beta-0.6.0
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Learn about vigilant mode.

Release 0.6.0

Major Features And Improvements

  • Concat operation now supports special modes to concatenate large number of files in parallel when the downstream operation is passed to sort (reported by @ekg). This mode is ~30-fold faster / thread and is parallelizable.
  • Introducing the experimental aggregation subroutine. Modelled based on the Datashader pipeline, Tomahawk can now natively construct aggregated datasets of billions of points into datasets of pixels that can be plotted using raster operations efficiently.
  • Slicing operator for two files has been re-instated. Use -O for output type (two or ld) when invoking the view subroutine

Bug Fixes and Other Changes

  • Bug fixes
    • Problem when importing variants within 1-base of each other (reported by @ekg)
    • Memory requirement problems when parallel sort merging very large files (reported by @ekg)
    • Removed default missingness filter (from 0.2 to 1.0) to support importing bcf with few samples
    • Fixed problem with linked intervals during slicing. Now correctly selects targetted associations based on both mates (reported by @ekg)
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