Install newer CGAL also in testing.yml. #126
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| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Build REHEATFUNQ | |
| run: | | |
| # Some basic environment information: | |
| echo "Current folder:" | |
| pwd | |
| ls -a | |
| echo "" | |
| ls .github | |
| ls .github/scripts | |
| echo "" | |
| # Install packages: | |
| sudo apt-get update | |
| sudo apt-get install -y libproj-dev libeigen3-dev \ | |
| libcgal-dev libgeographic-dev liblapacke-dev\ | |
| build-essential\ | |
| git openssh-client ssh cython3 \ | |
| python3-sphinx ninja-build cmake-data \ | |
| cmake-extras extra-cmake-modules \ | |
| wget | |
| python3 -m pip install --user numpy | |
| # Use modern GCC: | |
| sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-10 10 | |
| sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-10 10 | |
| # Monkey-patched install of newer boost version: | |
| wget -q https://archives.boost.io/release/1.86.0/source/boost_1_86_0.tar.bz2 | |
| mkdir boost-dl | |
| tar --bzip2 -xf boost_1_86_0.tar.bz2 -C boost-dl | |
| sudo rm -r /usr/include/boost | |
| sudo cp -r boost-dl/boost_1_86_0/boost /usr/include | |
| # Monkey-patched install of newer CGAL verison: | |
| wget -q https://github.com/CGAL/cgal/releases/download/v5.6.1/CGAL-5.6.1-library.tar.xz | |
| mkdir cgal-dl | |
| tar -xf CGAL-5.6.1-library.tar.xz -C cgal-dl | |
| rm CGAL-5.6.1-library.tar.xz | |
| rm -r /usr/include/CGAL | |
| cp -r cgal-dl/CGAL-5.6.1/include/CGAL /usr/include | |
| rm -r cgal-dl | |
| # Python installs: | |
| python3 -m pip install --upgrade pip | |
| sudo apt purge python3-setuptools | |
| python3 -m pip install --user --verbose . | |
| - name: Lint with flake8 | |
| run: | | |
| python3 -m pip install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 reheatfunq --count --select=E9,F63,F7,F82 --show-source --statistics | |
| flake8 jupyter --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Test with pytest | |
| run: | | |
| # | |
| python3 -m pip install pytest | |
| cd testing | |
| # Ensure that we can execute the imports: | |
| python3 test_anomaly_posterior.py | |
| # Run the test suite: | |
| pytest -s | |
| - name: Build Dockerfile | |
| run: | | |
| sudo apt-get -y install podman | |
| podman build --format docker -t reheatfunq . |