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ENH: Autoupdate hooks [pre-commit.ci] #1928
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| name: Flake8, MyPy, and Hello World | |
| # This workflow runs linting via Flake8 and Mypy. | |
| # It also checks that the HelloWorld model can be trained. | |
| on: | |
| pull_request: | |
| jobs: | |
| flake_mypy_helloworld_linux: | |
| name: Flake8, MyPy, HelloWorld on Linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| submodules: true | |
| - name: flake8 | |
| run: | | |
| pip install flake8 | |
| python -m flake8 | |
| shell: bash | |
| if: always() | |
| # This script also does "conda init" for all shells. For bash, this modifies .bashrc. | |
| # However, the default "bash" in a github workflow does not execute bashrc. Hence, all | |
| # scripts that use this environment need to either hardcode the path to Python, or use | |
| # a customized shell that executes bashrc, like "shell: bash -eo pipefail {0}" | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: InnerEye | |
| auto-activate-base: false | |
| environment-file: environment.yml | |
| python-version: 3.8.3 | |
| if: always() | |
| - name: mypy | |
| run: | | |
| $CONDA/envs/InnerEye/bin/python mypy_runner.py --mypy=$CONDA/envs/InnerEye/bin/mypy | |
| if: always() | |
| - name: Run HelloWorld model | |
| run: | | |
| $CONDA/envs/InnerEye/bin/python ./InnerEye/ML/runner.py --model=HelloWorld | |
| env: | |
| PYTHONPATH: ${{ github.workspace }} | |
| if: always() | |
| - name: Run HelloContainer model | |
| run: | | |
| $CONDA/envs/InnerEye/bin/python ./InnerEye/ML/runner.py --model=HelloContainer | |
| env: | |
| PYTHONPATH: ${{ github.workspace }} | |
| if: always() | |
| hello_world_windows: | |
| name: HelloWorld on Windows | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| submodules: true | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: InnerEye | |
| auto-activate-base: false | |
| environment-file: primary_deps.yml | |
| python-version: 3.8.3 | |
| if: always() | |
| - name: Run HelloWorld model | |
| run: | | |
| conda info | |
| %CONDA%\envs\InnerEye\bin\python ./InnerEye/ML/runner.py --model=HelloWorld | |
| env: | |
| PYTHONPATH: ${{ github.workspace }} | |
| shell: cmd |