Microbial Genomics at CBIB
- 17 followers
- Santiago - Chile
- http://www.castrolab.org
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pasteTaxID
pasteTaxID PublicThis script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta
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Workshop-PUC
Workshop-PUC PublicRepositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, C…
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HumanMicrobiomeAnalysis
HumanMicrobiomeAnalysis PublicR Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data
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parseMethods
parseMethods PublicParse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on devel…
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Repositories
- plotMyGBK Public
microgenomics/plotMyGBK’s past year of commit activity - HumanMicrobiomeAnalysis Public
R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data
microgenomics/HumanMicrobiomeAnalysis’s past year of commit activity - pasteTaxID Public
This script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta
microgenomics/pasteTaxID’s past year of commit activity - tutorials Public
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
microgenomics/tutorials’s past year of commit activity - Workshop-PUC Public
Repositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017
microgenomics/Workshop-PUC’s past year of commit activity - Workshop-UTA Public
Repositorio para el taller de Bioinformática a realizarse en la Universidad de Tarapacá, Arica, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017.
microgenomics/Workshop-UTA’s past year of commit activity - parseMethods Public
Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on development), constrains (metaphlan dependent))
microgenomics/parseMethods’s past year of commit activity - analysisMethods Public
Analysis Methods Module is a final module from SEPA ( a multi pipe to test pathogen software detection), that analyze the cvs file provided by Parse Module (or your own cvs file in particular format), the analysis aviable are R^2, RRMSE (relative error) and ROC Curve
microgenomics/analysisMethods’s past year of commit activity
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