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Set shortRead to True and update unit test #433

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Mar 18, 2025
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Set shortRead to True and update unit test #433

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2 changes: 1 addition & 1 deletion nmdc_automation/config/workflows/workflows.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -105,7 +105,7 @@ Workflows:
Inputs:
input_files: do:Filtered Sequencing Reads
proj: "{workflow_execution_id}"
shortRead: false
shortRead: true
Workflow Execution:
name: "Metagenome Assembly for {id}"
type: nmdc:MetagenomeAssembly
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2 changes: 1 addition & 1 deletion tests/test_sched.py
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Expand Up @@ -286,7 +286,7 @@ def test_scheduler_create_job_rec_has_input_files_as_array(test_db, mock_api, wo
assembly = assemblies[0]

assert isinstance(assembly["config"]["inputs"]["shortRead"], bool)
assert assembly["config"]["inputs"]["shortRead"] == False
assert assembly["config"]["inputs"]["shortRead"] == True
assert isinstance(assembly["config"]["inputs"]["input_files"], list)