updated example in docs

microbiome · Jun 4, 2024 · b8b345a · b8b345a
1 parent a137806
commit b8b345a
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/R/plotAbundance.R b/R/plotAbundance.R
@@ -72,8 +72,8 @@
 #' data(GlobalPatterns, package="mia")
 #' se <- GlobalPatterns
 #' 
-#' ## Plotting abundance using the first taxonomic rank as default
-#' plotAbundance(se, assay.type="counts")
+#' ## Plotting counts using the first taxonomic rank as default
+#' plotAbundance(se, assay.type="counts", use_relative=FALSE) + labs(y="Counts")
 #' 
 #' ## Using "Phylum" as rank
 #' plotAbundance(se, assay.type="counts", rank = "Phylum", add_legend = FALSE)

diff --git a/man/plotAbundance.Rd b/man/plotAbundance.Rd