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microbiome · Jan 15, 2025 · 11dd880 · 11dd880
1 parent 4470737
commit 11dd880
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/R/AllGenerics.R b/R/AllGenerics.R
@@ -271,7 +271,7 @@ setGeneric("getUnique", signature = c("x"), function(x, ...)
 #' @export
 setGeneric("getTop", signature = "x",
     function(
-        x, top= 5L, method = c("mean","sum","median"),
+        x, top= 5L, method = c("mean", "sum", "median"),
         assay.type = assay_name, assay_name = "counts", na.rm = TRUE, ...)
     standardGeneric("getTop"))
 

diff --git a/R/summaries.R b/R/summaries.R
@@ -105,7 +105,7 @@ NULL
 #' @export
 setMethod("getTop", signature = c(x = "SummarizedExperiment"),
     function(
-        x, top = 5L, method = c("mean","sum","median","prevalence"),
+        x, top = 5L, method = c("mean", "sum", "median", "prevalence"),
         assay.type = assay_name, assay_name = "counts", 
         na.rm = TRUE, ...){
         # input check