Improve Tengeler2020 #285
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7 errors and 9 warnings
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Run neurogenomics/rworkflows@master
No such keg: /opt/homebrew/Cellar/r
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Run neurogenomics/rworkflows@master
package or namespace load failed for ‘matrixStats’ in dyn.load(file, DLLpath = DLLpath, ...):
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Run neurogenomics/rworkflows@master
Failed to install 'mia' from local:
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
Failed to install 'mia' from local:
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Run neurogenomics/rworkflows@master
package or namespace load failed for ‘matrixStats’ in dyn.load(file, DLLpath = DLLpath, ...):
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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Run neurogenomics/rworkflows@master
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Run neurogenomics/rworkflows@master
harfbuzz 8.4.0 is already installed and up-to-date.
To reinstall 8.4.0, run:
brew reinstall harfbuzz
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Run neurogenomics/rworkflows@master
macOS's Gatekeeper has been disabled for this Cask
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Run neurogenomics/rworkflows@master
No files were found with the provided path: check. No artifacts will be uploaded.
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run neurogenomics/rworkflows@master
Unexpected input(s) 'enable_act', valid inputs are ['run_bioccheck', 'run_rcmdcheck', 'as_cran', 'run_vignettes', 'run_covr', 'run_pkgdown', 'has_testthat', 'has_runit', 'has_latex', 'tinytex_installer', 'tinytex_version', 'pandoc_version', 'run_docker', 'docker_registry', 'docker_user', 'docker_org', 'DOCKER_TOKEN', 'GITHUB_TOKEN', 'cache_version', 'runner_os', 'timeout', 'miniforge_variant', 'miniforge_version', 'activate_environment', 'environment_file', 'channels', 'free_diskspace']
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Post Run neurogenomics/rworkflows@master
Unexpected input(s) 'enable_act', valid inputs are ['run_bioccheck', 'run_rcmdcheck', 'as_cran', 'run_vignettes', 'run_covr', 'run_pkgdown', 'has_testthat', 'has_runit', 'has_latex', 'tinytex_installer', 'tinytex_version', 'pandoc_version', 'run_docker', 'docker_registry', 'docker_user', 'docker_org', 'DOCKER_TOKEN', 'GITHUB_TOKEN', 'cache_version', 'runner_os', 'timeout', 'miniforge_variant', 'miniforge_version', 'activate_environment', 'environment_file', 'channels', 'free_diskspace']
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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