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7 changes: 0 additions & 7 deletions inst/pages/mmuphin_meta_analysis.qmd
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Expand Up @@ -113,13 +113,6 @@ se_pathway <- sampleMetadata |>

First, let's look into the relative abundance data.

```{r}
# Disable running the analysis temporaly. There is a problem in mia
# agglomeration and curatedMetagenomicData
# https://github.com/waldronlab/curatedMetagenomicData/pull/309
knitr::opts_chunk$set(eval = FALSE)
```

### Performing batch (study) effect adjustment with adjust_batch for relative abundance {#sec-batch-effect-adjustment}

In this analysis, we are using two input files. The first input file is
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