Publish mmstudio/latest

micro-manager · Jul 26, 2024 · 481f5b7 · 481f5b7
1 parent 0f3aba8
commit 481f5b7
Show file tree

Hide file tree

Showing 9 changed files with 60 additions and 60 deletions.
diff --git a/deprecated-list.html b/deprecated-list.html
@@ -186,13 +186,13 @@ <h2 title="Contents">Contents</h2>
 </td>
 </tr>
 <tr class="altColor">
-<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#channelGroup">org.micromanager.acquisition.SequenceSettings.channelGroup</a>
-<div class="block"><span class="deprecationComment">use Builder and channelGroup() instead</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/ChannelSpec.html#channelGroup">org.micromanager.acquisition.ChannelSpec.channelGroup</a>
+<div class="block"><span class="deprecationComment">Use Builder and getters instead</span></div>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colOne"><a href="org/micromanager/acquisition/ChannelSpec.html#channelGroup">org.micromanager.acquisition.ChannelSpec.channelGroup</a>
-<div class="block"><span class="deprecationComment">Use Builder and getters instead</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#channelGroup">org.micromanager.acquisition.SequenceSettings.channelGroup</a>
+<div class="block"><span class="deprecationComment">use Builder and channelGroup() instead</span></div>
 </td>
 </tr>
 <tr class="altColor">
@@ -457,7 +457,7 @@ <h2 title="Contents">Contents</h2>
 </tr>
 <tr class="rowColor">
 <td class="colOne"><a href="org/micromanager/data/DataProvider.html#getAxisLength-java.lang.String-">org.micromanager.data.DataProvider.getAxisLength(String)</a>
-<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>DataProvider.getNextIndex(String)</code></a> instead.</span></div>
+<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>getNextIndex(String)</code></a> instead.</span></div>
 </td>
 </tr>
 <tr class="altColor">
@@ -702,7 +702,7 @@ <h2 title="Contents">Contents</h2>
 </tr>
 <tr class="rowColor">
 <td class="colOne"><a href="org/micromanager/data/DataProvider.html#getMaxIndices--">org.micromanager.data.DataProvider.getMaxIndices()</a>
-<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>DataProvider.getNextIndex(String axis)</code></a> instead</span></div>
+<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>getNextIndex(String axis)</code></a> instead</span></div>
 </td>
 </tr>
 <tr class="altColor">

diff --git a/index-all.html b/index-all.html
@@ -1744,7 +1744,7 @@ <h2 class="title">G</h2>
 <dt><span class="memberNameLink"><a href="org/micromanager/data/DataProvider.html#getAxisLength-java.lang.String-">getAxisLength(String)</a></span> - Method in interface org.micromanager.data.<a href="org/micromanager/data/DataProvider.html" title="interface in org.micromanager.data">DataProvider</a></dt>
 <dd>
 <div class="block"><span class="deprecatedLabel">Deprecated.</span>
-<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>DataProvider.getNextIndex(String)</code></a> instead.</span></div>
+<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>getNextIndex(String)</code></a> instead.</span></div>
 </div>
 </dd>
 <dt><span class="memberNameLink"><a href="org/micromanager/data/SummaryMetadata.html#getAxisOrder--">getAxisOrder()</a></span> - Method in interface org.micromanager.data.<a href="org/micromanager/data/SummaryMetadata.html" title="interface in org.micromanager.data">SummaryMetadata</a></dt>
@@ -2670,7 +2670,7 @@ <h2 class="title">G</h2>
 <dt><span class="memberNameLink"><a href="org/micromanager/data/DataProvider.html#getMaxIndices--">getMaxIndices()</a></span> - Method in interface org.micromanager.data.<a href="org/micromanager/data/DataProvider.html" title="interface in org.micromanager.data">DataProvider</a></dt>
 <dd>
 <div class="block"><span class="deprecatedLabel">Deprecated.</span>
-<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>DataProvider.getNextIndex(String axis)</code></a> instead</span></div>
+<div class="block"><span class="deprecationComment">Use <a href="org/micromanager/data/DataProvider.html#getNextIndex-java.lang.String-"><code>getNextIndex(String axis)</code></a> instead</span></div>
 </div>
 </dd>
 <dt><span class="memberNameLink"><a href="org/micromanager/data/Storage.html#getMaxIndices--">getMaxIndices()</a></span> - Method in interface org.micromanager.data.<a href="org/micromanager/data/Storage.html" title="interface in org.micromanager.data">Storage</a></dt>

diff --git a/org/micromanager/class-use/PropertyMap.html b/org/micromanager/class-use/PropertyMap.html
@@ -140,29 +140,29 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
 </td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#emptyPropertyMap--">emptyPropertyMap</a></span>()</code>
-<div class="block">Return the empty property map.</div>
-</td>
-</tr>
-<tr class="rowColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
 <td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#emptyPropertyMap--">emptyPropertyMap</a></span>()</code>
 <div class="block">Returns an empty property map.</div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#fromJSON-java.lang.String-">fromJSON</a></span>(java.lang.String&nbsp;json)</code>
-<div class="block">Create a property map from its JSON-serialized form.</div>
+<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#emptyPropertyMap--">emptyPropertyMap</a></span>()</code>
+<div class="block">Return the empty property map.</div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
 <td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#fromJSON-java.lang.String-">fromJSON</a></span>(java.lang.String&nbsp;json)</code>
 <div class="block">Creates a property map from its JSON-serialized form.</div>
 </td>
 </tr>
+<tr class="rowColor">
+<td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
+<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#fromJSON-java.lang.String-">fromJSON</a></span>(java.lang.String&nbsp;json)</code>
+<div class="block">Create a property map from its JSON-serialized form.</div>
+</td>
+</tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
 <td class="colLast"><span class="typeNameLabel">PropertyMap.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMap.html#getPropertyMap-java.lang.String-">getPropertyMap</a></span>(java.lang.String&nbsp;key)</code>
@@ -175,14 +175,14 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
               <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;aDefault)</code>&nbsp;</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
+<td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
+<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
 <div class="block">Create a property map from its JSON-serialized form stored in a file.</div>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
+<td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
+<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
 <div class="block">Create a property map from its JSON-serialized form stored in a file.</div>
 </td>
 </tr>
@@ -194,20 +194,20 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">StagePosition.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/StagePosition.html#toPropertyMap--">toPropertyMap</a></span>()</code>
-<div class="block">Returns this StagePosition instance as a PropertyMap.</div>
+<td class="colLast"><span class="typeNameLabel">PositionList.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PositionList.html#toPropertyMap--">toPropertyMap</a></span>()</code>
+<div class="block">Creates a PropertyMap from this PositionList.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">MultiStagePosition.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/MultiStagePosition.html#toPropertyMap--">toPropertyMap</a></span>()</code>
-<div class="block">Returns a propertymap describing this MultiStagePosition.</div>
+<td class="colLast"><span class="typeNameLabel">StagePosition.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/StagePosition.html#toPropertyMap--">toPropertyMap</a></span>()</code>
+<div class="block">Returns this StagePosition instance as a PropertyMap.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PositionList.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PositionList.html#toPropertyMap--">toPropertyMap</a></span>()</code>
-<div class="block">Creates a PropertyMap from this PositionList.</div>
+<td class="colLast"><span class="typeNameLabel">MultiStagePosition.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/MultiStagePosition.html#toPropertyMap--">toPropertyMap</a></span>()</code>
+<div class="block">Returns a propertymap describing this MultiStagePosition.</div>
 </td>
 </tr>
 </tbody>

diff --git a/org/micromanager/data/class-use/Coords.html b/org/micromanager/data/class-use/Coords.html
@@ -390,14 +390,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Coords.html" title="inter
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DisplayPositionChangedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DisplayPositionChangedEvent.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
-<div class="block">returns the new display position.</div>
+<td class="colLast"><span class="typeNameLabel">DataViewer.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DataViewer.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
+<div class="block">Get the coordinates for the currently displayed images.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DataViewer.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DataViewer.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
-<div class="block">Get the coordinates for the currently displayed images.</div>
+<td class="colLast"><span class="typeNameLabel">DisplayPositionChangedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DisplayPositionChangedEvent.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
+<div class="block">returns the new display position.</div>
 </td>
 </tr>
 <tr class="rowColor">

diff --git a/org/micromanager/data/class-use/Datastore.html b/org/micromanager/data/class-use/Datastore.html
@@ -268,16 +268,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Datastore.html" title="in
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageOverwrittenEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageOverwrittenEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Provides the Datastore this image was added to; potentially useful for
- code that listens to events from multiple Datastores.</div>
+<td class="colLast"><span class="typeNameLabel">Pipeline.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Pipeline.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Get the output Datastore for this Pipeline.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Provides the Datastore this image was added to; potentially useful for
- code that listens to events from multiple Datastores.</div>
+<td class="colLast"><span class="typeNameLabel">DatastoreClosingEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/DatastoreClosingEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Returns the Datastore that is closing.</div>
 </td>
 </tr>
 <tr class="altColor">
@@ -288,14 +286,16 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Datastore.html" title="in
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DatastoreClosingEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/DatastoreClosingEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Returns the Datastore that is closing.</div>
+<td class="colLast"><span class="typeNameLabel">ImageOverwrittenEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageOverwrittenEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Provides the Datastore this image was added to; potentially useful for
+ code that listens to events from multiple Datastores.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Pipeline.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Pipeline.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Get the output Datastore for this Pipeline.</div>
+<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Provides the Datastore this image was added to; potentially useful for
+ code that listens to events from multiple Datastores.</div>
 </td>
 </tr>
 <tr class="rowColor">

diff --git a/org/micromanager/data/class-use/Image.html b/org/micromanager/data/class-use/Image.html
@@ -292,14 +292,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Image.html" title="interf
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Image.html" title="interface in org.micromanager.data">Image</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getImage--">getImage</a></span>()</code>
-<div class="block">Provides the Image that was deleted.</div>
+<td class="colLast"><span class="typeNameLabel">DataProviderHasNewImageEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/DataProviderHasNewImageEvent.html#getImage--">getImage</a></span>()</code>
+<div class="block">Provides the newly-added image.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Image.html" title="interface in org.micromanager.data">Image</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DataProviderHasNewImageEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/DataProviderHasNewImageEvent.html#getImage--">getImage</a></span>()</code>
-<div class="block">Provides the newly-added image.</div>
+<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getImage--">getImage</a></span>()</code>
+<div class="block">Provides the Image that was deleted.</div>
 </td>
 </tr>
 <tr class="rowColor">