Update ribotin to version 1.3 (bioconda#46357)

* Update ribotin to version 1.3 * fix makefile version patch
mencian · Mar 12, 2024 · e6b530d · e6b530d
1 parent 8c32c47
commit e6b530d
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Showing 3 changed files with 11 additions and 6 deletions.
diff --git a/recipes/ribotin/build.sh b/recipes/ribotin/build.sh
@@ -4,6 +4,7 @@ cd $SRC_DIR
 make all
 cp bin/ribotin-ref $PREFIX/bin
 cp bin/ribotin-verkko $PREFIX/bin
+cp bin/ribotin-hifiasm $PREFIX/bin
 
 mkdir -p $PREFIX/share/${PKG_NAME}-${PKG_VERSION}
 cp template_seqs/rDNA_one_unit.fasta $PREFIX/share/${PKG_NAME}-${PKG_VERSION}/rDNA_one_unit.fasta

diff --git a/recipes/ribotin/makefile.patch b/recipes/ribotin/makefile.patch
@@ -1,5 +1,5 @@
 diff --git a/makefile b/makefile
-index 40a23f7..b35510c 100644
+index 5166dd0..83ff306 100644
 --- a/makefile
 +++ b/makefile
 @@ -15,8 +15,8 @@ OBJ = $(patsubst %, $(ODIR)/%, $(_OBJ))
@@ -13,11 +13,15 @@ index 40a23f7..b35510c 100644
 
  $(shell mkdir -p bin)
  $(shell mkdir -p obj)
-@@ -30,10 +30,10 @@ $(BINDIR)/ribotin-ref: $(OBJ) $(ODIR)/ribotin-ref.o
+@@ -33,13 +33,13 @@ $(BINDIR)/ribotin-ref: $(OBJ) $(ODIR)/ribotin-ref.o
  	$(GPP) -o $@ $^ $(LINKFLAGS)
 
  $(ODIR)/ribotin-verkko.o: $(SRCDIR)/ribotin-verkko.cpp $(DEPS) $(OBJ)
 -	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="\"$(TEMPLATEPATH)\""
++	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="$(TEMPLATEPATH)"
+
+ $(ODIR)/ribotin-hifiasm.o: $(SRCDIR)/ribotin-hifiasm.cpp $(DEPS) $(OBJ)
+-	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="\"$(TEMPLATEPATH)\""
 +	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="$(TEMPLATEPATH)"
 
  $(ODIR)/ribotin-ref.o: $(SRCDIR)/ribotin-ref.cpp $(DEPS) $(OBJ)

diff --git a/recipes/ribotin/meta.yaml b/recipes/ribotin/meta.yaml
@@ -1,18 +1,18 @@
 {% set name = "ribotin" %}
-{% set version = "1.2" %}
+{% set version = "1.3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/maickrau/{{ name }}/files/13435950/{{ name }}.tar.gz
-  sha256: 88d7be40dc641b96ef6f36cd2e464e8d65395ab50158efa1d2d49203b42ffa79
+  url: https://github.com/maickrau/{{ name }}/files/14571457/{{ name }}.tar.gz
+  sha256: 7eda750e4fd1064eedf3016f5a49d6b6994e336619fc3b5e4afe4655b2873b70
   patches:
     - makefile.patch
 
 build:
-  number: 1
+  number: 0
   skip: True # [osx]
   run_exports:
     - {{ pin_subpackage('ribotin', max_pin="x.x") }}