Build shared library for quicktree (bioconda#45326)

* Build shared library for quicktree

* Make BSD mkdir happy

recipes/quicktree/build.sh

@@ -1,5 +1,12 @@
 #!/bin/bash
 
-mkdir -p $PREFIX/bin
+set -eux
+
+mkdir -p "$PREFIX"/{bin,lib,include/quicktree}
+
 make CC=$CC
+
 cp quicktree $PREFIX/bin
+cp libquicktree.so "${PREFIX}/lib/"
+# some header files are named generic enough to warrant namespacing
+cp include/*.h "${PREFIX}/include/quicktree/"

recipes/quicktree/meta.yaml

@@ -1,21 +1,26 @@
+{% set name = "quicktree" %}
 {% set version = "2.5" %}
 
 package:
-  name: quicktree
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/khowe/quicktree/archive/v{{ version }}.tar.gz
   sha256: 731aa845ce3f1f0645bd0df2b54df75f78fce065d6a3ddc47fedf4bdcb11c248
+  patches:
+    - patches/0001-Add-rule-to-build-shared-library.patch
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
-  run:
 
 test:
   commands:

recipes/quicktree/patches/0001-Add-rule-to-build-shared-library.patch

@@ -0,0 +1,43 @@
+From 390c2db84a0fd0ff3a05d77407d18da3b9c26d63 Mon Sep 17 00:00:00 2001
+From: Travis Wrightsman <[email protected]>
+Date: Sat, 20 Jan 2024 17:46:20 -0500
+Subject: [PATCH] Add rule to build shared library
+
+---
+ Makefile | 9 ++++++---
+ 1 file changed, 6 insertions(+), 3 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 14e42a4..7fe8385 100644
+--- a/Makefile
++++ b/Makefile
+@@ -15,15 +15,18 @@ QUICKTREEOBJ = $(COMMON) $(OBJ)/quicktree.o $(OBJ)/buildtree.o $(OBJ)/tree.o
+
+
+ CC	= gcc
+-CFLAGS  = -c -I$(INC) -O2 -Wunused-result
++CFLAGS  = -c -I$(INC) -O2 -Wunused-result -fPIC
+
+ LFLAGS = -g 
+
+-all: quicktree
++all: quicktree libquicktree.so
+
+ quicktree : $(QUICKTREEOBJ)
+ 	$(CC) $(LFLAGS) -o $@ $(QUICKTREEOBJ) -lm
+
++libquicktree.so: $(QUICKTREEOBJ)
++	$(CC) -shared $(LFLAGS) -o $@ $(QUICKTREEOBJ) -lm
++
+ $(OBJ)/quicktree.o : $(SRC)/quicktree.c $(INC)/version.h
+ 	$(CC) $(CFLAGS) -o $(OBJ)/quicktree.o $(SRC)/quicktree.c
+
+@@ -52,4 +55,4 @@ $(OBJ)/options.o : $(SRC)/options.c $(INC)/options.h
+ 	$(CC) $(CFLAGS) -o $(OBJ)/options.o $(SRC)/options.c
+
+ clean:
+-	rm $(OBJ)/*.o quicktree
++	rm $(OBJ)/*.o quicktree libquicktree.so
+-- 
+2.39.2
+