Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: Guard against NoneType in mutation-sequence logic #73

Open
wants to merge 1 commit into
base: enhanced_hmm
Choose a base branch
from

Conversation

berntpopp
Copy link

  • Added a check to ensure mutation_sequence is not None before appending with += '&' + temp_mutation in both hmm_alignment.py and vntr_finder.py.
  • This prevents a TypeError: unsupported operand type(s) for +=: 'NoneType' and 'str' when merging adjacent deletions.

- Added a check to ensure `mutation_sequence` is not `None` before appending
  with `+= '&' + temp_mutation` in both `hmm_alignment.py` and `vntr_finder.py`.
- This prevents a `TypeError: unsupported operand type(s) for +=: 'NoneType' and 'str'`
  when merging adjacent deletions.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant