add fhir data evaluator to triangle

feasibility-portal/backend/docker-compose.yml

@@ -82,7 +82,6 @@ services:
       PRIVACY_THRESHOLD_SITES_RESULT: ${DATAPORTAL_BACKEND_PRIVACY_THRESHOLD_SITES_RESULT:-0}
       QUERYRESULT_DISABLE_LOG_FILE_ENCRYPTION: "true"
       # ---- Elastic Search
-      ELASTIC_SEARCH_ENABLED: ${DATAPORTAL_BACKEND_ELASTIC_SEARCH_ENABLED:-true}
       ELASTIC_SEARCH_HOST: ${DATAPORTAL_BACKEND_ELASTIC_SEARCH_HOST:-dataportal-elastic}
       ELASTIC_SEARCH_FILTER: ${DATAPORTAL_BACKEND_ELASTIC_SEARCH_FILTER:-context,terminology,kds_module}
       # ---- logging

feasibility-triangle/.gitignore

@@ -2,3 +2,5 @@
 /testdata/*.json
 /testdata/*.zip
 troubleshooting/input-queries.json
+fhir-data-evaluator/output/*
+!fhir-data-evaluator/output/README.md

feasibility-triangle/fhir-data-evaluator/.env.default

@@ -0,0 +1,21 @@
+FDE_CONVERT_TO_CSV=true
+FDE_FHIR_SERVER=http://localhost:8080/fhir
+FDE_FHIR_USER=
+FDE_FHIR_PASSWORD=
+FDE_FHIR_MAX_CONNECTIONS=4
+FDE_FHIR_MAX_QUEUE_SIZE=500
+FDE_FHIR_PAGE_COUNT=1000
+FDE_FHIR_BEARER_TOKEN=
+FDE_FHIR_OAUTH_ISSUER_URI=
+FDE_FHIR_OAUTH_CLIENT_ID=
+FDE_FHIR_OAUTH_CLIENT_SECRET=
+FDE_MAX_IN_MEMORY_SIZE_MIB=10
+FDE_INPUT_MEASURE=../Documentation/example-measures/example-measure-kds.json
+FDE_OUTPUT_DIR=../output
+FDE_TZ=Europe/Berlin
+FDE_FHIR_REPORT_DESTINATION_SERVER=http://localhost:8080/fhir
+FDE_SEND_REPORT_TO_SERVER=false
+FDE_AUTHOR_IDENTIFIER_SYSTEM=http://dsf.dev/sid/organization-identifier
+FDE_AUTHOR_IDENTIFIER_VALUE=fde-dic
+FDE_PROJECT_IDENTIFIER_SYSTEM=http://medizininformatik-initiative.de/sid/project-identifier
+FDE_PROJECT_IDENTIFIER_VALUE=fdpg-data-availability-report

feasibility-triangle/fhir-data-evaluator/docker-compose.yml

@@ -0,0 +1,30 @@
+services:
+  fhir-data-evaluator:
+    image: ghcr.io/medizininformatik-initiative/fhir-data-evaluator:pr-48
+    environment:
+      CONVERT_TO_CSV: ${FDE_CONVERT_TO_CSV:-true}
+      FHIR_SERVER: ${FDE_FHIR_SERVER:-http://localhost:8080/fhir}
+      FHIR_USER: ${FDE_FHIR_USER:-}
+      FHIR_PASSWORD: ${FDE_FHIR_PASSWORD:-}
+      FHIR_MAX_CONNECTIONS: ${FDE_FHIR_MAX_CONNECTIONS:-4}
+      FHIR_MAX_QUEUE_SIZE: ${FDE_FHIR_MAX_QUEUE_SIZE:-500}
+      FHIR_PAGE_COUNT: ${FDE_FHIR_PAGE_COUNT:-1000}
+      FHIR_BEARER_TOKEN: ${FDE_FHIR_BEARER_TOKEN:-}
+      FHIR_OAUTH_ISSUER_URI: ${FDE_FHIR_OAUTH_ISSUER_URI:-}
+      FHIR_OAUTH_CLIENT_ID: ${FDE_FHIR_OAUTH_CLIENT_ID:-}
+      FHIR_OAUTH_CLIENT_SECRET: ${FDE_FHIR_OAUTH_CLIENT_SECRET:-}
+      MAX_IN_MEMORY_SIZE_MIB: ${FDE_MAX_IN_MEMORY_SIZE_MIB:-10}
+      SEND_REPORT_TO_SERVER: ${FDE_SEND_REPORT_TO_SERVER:-false}
+      AUTHOR_IDENTIFIER_SYSTEM: ${FDE_AUTHOR_IDENTIFIER_SYSTEM:-http://dsf.dev/sid/organization-identifier}
+      AUTHOR_IDENTIFIER_VALUE: ${FDE_AUTHOR_IDENTIFIER_VALUE:-fde-dic}
+      PROJECT_IDENTIFIER_SYSTEM: ${FDE_PROJECT_IDENTIFIER_SYSTEM:-http://medizininformatik-initiative.de/sid/project-identifier}
+      PROJECT_IDENTIFIER_VALUE: ${FDE_PROJECT_IDENTIFIER_VALUE:-fdpg-data-availability-report}
+      FHIR_REPORT_DESTINATION_SERVER: ${FDE_FHIR_REPORT_DESTINATION_SERVER:-http://localhost:8080/fhir}
+      TZ: ${FDE_TZ:-Europe/Berlin}
+    extra_hosts:
+      - "auth.localhost:host-gateway"
+      - "localhost:host-gateway"
+    volumes:
+    - "${FDE_INPUT_MEASURE:-./measure/kds-measure.json}:/app/measure.json"
+    - "${FDE_OUTPUT_DIR:-./output}:/app/output"
+    - ../auth:/app/certs